1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GTCACACTACGATCCGGAATCCTCGACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttacatcatattttcatatgtgattcttagaatcagaaattcttgtgtgtgttaggtctcaatctctcttgtgattgcaggaactccgtccatg...
species | Physcomitrella patens |
transcript | PP1S425_13V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAG GTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCAAGAAGEST: gi|67569055|gb|BJ941879.1|BJ941879
genomic: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttac ... tgtatcgcagGTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCAAGAAG
EST: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAG GTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCAAGAAGEST: gi|18349906|gb|BJ181957.1|BJ181957
genomic: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttac ... tgtatcgcagGTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCAAGAAG
EST: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAG GTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCAEST: gi|18354527|gb|BJ186583.1|BJ186583
genomic: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttac ... tgtatcgcagGTTTTGTACACACTACGCCTATACAATGTGACTGTGACTGATGCCA
EST: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAG GTTTTGTACACACT
genomic: ACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttac ... tgtatcgcagGTTTTGTACACACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACACTACGATCCGGAATCCTCGACGTGGATCATCGTGTCGAAGACACAGGCAGACAGATTGTGAACGACAAGgtatatttacatcatattttcatatgtgattcttagaatcagaaattcttgtgtgtgttaggtctcaatctctcttgtgattgcaggaactccgtccatg
- - - - - - - - - - - - - - - - - - - - CGAAGA