1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtgtgataagagagtctctgatgcttgtgttggtccctcgggatacattcagttccaaaaactgcgcagactgatttttcccgtgccatcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCG
species | Physcomitrella patens |
transcript | PP1S424_22V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATCCCCTTNGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|18327010|gb|BJ159011.1|BJ159011
genomic: TCATCCCCTT-GCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162273977|gb|FC450116.1|FC450116
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|19788276|gb|BQ040746.1|BQ040746
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162260191|gb|FC436326.1|FC436326
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|208382870|gb|DC928295.1|DC928295
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162278876|gb|FC454927.1|FC454927
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162236682|gb|FC413777.1|FC413777
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162273976|gb|FC450115.1|FC450115
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162259659|gb|FC436704.1|FC436704
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162263104|gb|FC440082.1|FC440082
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162270768|gb|FC446381.1|FC446381
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|100411270|gb|BY974553.1|BY974553
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162264248|gb|FC441350.1|FC441350
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162263103|gb|FC440081.1|FC440081
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162270220|gb|FC447232.1|FC447232
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162272167|gb|FC448676.1|FC448676
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162273701|gb|FC449424.1|FC449424
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162278875|gb|FC454926.1|FC454926
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162273757|gb|FC449480.1|FC449480
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|18325347|gb|BJ157343.1|BJ157343
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|67568787|gb|BJ941611.1|BJ941611
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162265463|gb|FC440789.1|FC440789
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162275819|gb|FC451380.1|FC451380
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: AACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|100362718|gb|BY947493.1|BY947493
genomic: AACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162265542|gb|FC441557.1|FC441557
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACNTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162272168|gb|FC448677.1|FC448677
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|67575999|gb|BJ948823.1|BJ948823
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCNAGACACATTCCGTATCTTGAAGAGCEST: gi|162263098|gb|FC440076.1|FC440076
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|18333294|gb|BJ165308.1|BJ165308
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: CTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162236681|gb|FC413776.1|FC413776
genomic: CTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162260192|gb|FC436327.1|FC436327
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162265462|gb|FC440788.1|FC440788
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162265762|gb|FC443168.1|FC443168
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|162273702|gb|FC449425.1|FC449425
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCEST: gi|208397629|gb|DC912247.1|DC912247
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
EST: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCG GTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
genomic: GTCATCCCCTTGCTAACACCTCCGTCGATGGATTCCTCAAAGTTGGAGCGgtgggtattt ... tcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGC
tacattcagttccaaaaactgcgcagactgatttttcccgtgccatcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCG
gactgat putative branch site (score: 3)
ccatctt putative PPT
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgtgataagagagtctctgatgcttgtgttggtccctcgggatacattcagttccaaaaactgcgcagactgatttttcccgtgccatcttgtgcagGTCGGTGCAGCCCATGCTGCTTTGCAAGACACATTCCGTATCTTGAAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA