1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cggctaaatgcaattacgatgctgttaagttcagcagacgcgctctttttccttcatgacttccgaggcctcacttgcccgcatgggtgtggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGCGATCAAGGTTGTCAGCGTCTGTTGAGGATCCTTCCCTTAACGTCATTG
species | Physcomitrella patens |
transcript | PP1S424_22V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTG GTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGEST: gi|162264249|gb|FC441351.1|FC441351
genomic: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTGgtatcgcatt ... ggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
EST: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTG GTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGEST: gi|100389283|gb|BY971033.1|BY971033
genomic: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTGgtatcgcatt ... ggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
EST: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTG GTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGEST: gi|162264248|gb|FC441350.1|FC441350
genomic: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTGgtatcgcatt ... ggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
EST: AGTGTTNGAAGCTGCGCAAACTGGTGAAAGCATTCGGTG GTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGEST: gi|208353927|gb|DC914081.1|DC914081
genomic: AGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTGgtatcgcatt ... ggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
EST: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTG GTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
genomic: TTGCGTCTGCTAGTGTTTGAAGCTGCGCAAACTGGTGAAAGCATTCGGTGgtatcgcatt ... ggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTG
tttttccttcatgacttccgaggcctcacttgcccgcatgggtgtggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGCGATCAAGGTTGTCAGCGTCTGTTGAGGATCCTTCCCTTAACGTCATTG
gcctcac putative branch site (score: 15)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggctaaatgcaattacgatgctgttaagttcagcagacgcgctctttttccttcatgacttccgaggcctcacttgcccgcatgggtgtggctatgcagGTAATACTTCACTGACGTGTTGTGGTTAAGTATCGGAAGCACGAAATGGTGCGATCAAGGTTGTCAGCGTCTGTTGAGGATCCTTCCCTTAACGTCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgc