1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtttgtttagcagttgtttttcgatgctgattgttgcactgtgaagcttttctgcacttttaccatgcggcgtagtaaacctcgatttctttgttgtcttgcatgatcgtgtaatgcgggtgatttttcatgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACAAGCGTACCGAAGATGGCTCTTGGAAGGGGACAATCCTCAAATGCGAAGG
species | Physcomitrella patens |
transcript | PP1S424_10V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTC--T--- AGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACAEST: gi|18366949|gb|BJ199029.1|BJ199029
genomic: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTCTGTAAGgtttgtttgt ... tgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACA
EST: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTC--T--- AGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACAEST: gi|18368186|gb|BJ200271.1|BJ200271
genomic: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTCTGTAAGgtttgtttgt ... tgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACA
EST: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTCTGTAAG AGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACA
genomic: ATGCTGCTTTGTAGCGCTCGAATTTTAAGTTCGTCCGTTGTGTCTGTAAGgtttgtttgt ... tgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACA
tttctttgttgtcttgcatgatcgtgtaatgcgggtgatttttcatgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACAAGCGTACCGAAGATGGCTCTTGGAAGGGGACAATCCTCAAATGCGAAGG
tttttcat CT-rich tract
atttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgtttagcagttgtttttcgatgctgattgttgcactgtgaagcttttctgcacttttaccatgcggcgtagtaaacctcgatttctttgttgtcttgcatgatcgtgtaatgcgggtgatttttcatgagtgccagAGCGAGAAGGCGGGAGGACAAGGGGTTTCAGGTTGTGGGGTTTACAAAACAAGCGTACCGAAGATGGCTCTTGGAAGGGGACAATCCTCAAATGCGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG