1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttattgaagggggcgtgattgttgcaactgtgctcaggcgagattatgccgcttggtaggagtcagtcctgaatgggatgaaatgcgtactattttgcagGAAATGGGGGATGCCGAAATCGAGGGGCTGGTGCTAGAAAATAAGAATTTTTGCAATAAAATTTCTTTTCTGGAGAGTGAACTCAATCGTTCCGAGTCTG
species | Physcomitrella patens |
transcript | PP1S424_10V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGCCATTCACAGTTTCGCNTCTNTACCAGAGAACAACTCCATTGAT GAAATGGGGGATGCCGAAATCGAGGGGCTGGTGCTAGAAAATAAGAATTTTEST: gi|37847356|gb|BJ605364.1|BJ605364
genomic: TTCTTGCCATTCACAGTTTCGCCTCTCTACCAGAGAACAACTCCATTGATgtaagcacag ... tattttgcagGAAATGGGGGATGCCGAAATCGAGGGGCTGGTGCTAGAAAATAAGAATTTT
EST: TTNTTGCCATTCCCAGTTTCGCTTNTTTACCAGAGANCAACTCCATTGAT GAAATGGGGGATGCCGAAATCGAGGGGGCTGGTGCTAGAAAATAAGAATTT
genomic: TTCTTGCCATTCACAGTTTCGCCTCTCTACCAGAGAACAACTCCATTGATgtaagcacag ... tattttgcagGAAATGGGGGATGCCGAAATCGA-GGGGCTGGTGCTAGAAAATAAGAATTT
atgccgcttggtaggagtcagtcctgaatgggatgaaatgcgtactattttgcagGAAATGGGGGATGCCGAAATCGAGGGGCTGGTGCTAGAAAATAAGAATTTTTGCAATAAAATTTCTTTTCTGGAGAGTGAACTCAATCGTTCCGAGTCTG
ctatttt CT-rich tract
tactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattgaagggggcgtgattgttgcaactgtgctcaggcgagattatgccgcttggtaggagtcagtcctgaatgggatgaaatgcgtactattttgcagGAAATGGGGGATGCCGAAATCGAGGGGCTGGTGCTAGAAAATAAGAATTTTTGCAATAAAATTTCTTTTCTGGAGAGTGAACTCAATCGTTCCGAGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - -tgttgca