1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgagtccaagcctctctcttcgcatggacttatatgttcaggcgtaactttggagtgtaaatttgtatttttaatgcttctgaaatgtgtgcttttcagGTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTGGAGTGGGAGCCGAGTGGTTCCTTATATCGGACTCGTGTTGGTGAAGTCA
species | Physcomitrella patens |
transcript | PP1S422_9V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCTCTGCGGCTGGAGGATGCTATTCTTGCTAGCTACCATCACAATGAA GTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTGEST: gi|162199593|gb|FC373245.1|FC373245
genomic: AACCTCTGCGGCTGGAGGATGCTATTCTTGCTAGCTACCATCACAATGAAgttagttgcc ... tgcttttcagGTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTG
EST: AACCTCTGCGGCTGGAGGATGCTATTCTTGCTAGCTACCATCACAATGAA GTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTG
genomic: AACCTCTGCGGCTGGAGGATGCTATTCTTGCTAGCTACCATCACAATGAAgttagttgcc ... tgcttttcagGTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTG
taactttggagtgtaaatttgtatttttaatgcttctgaaatgtgtgcttttcagGTCAAATTTAGTGAGCTAAGTTTGGATACATTCCGCATGCTGCAAGCTTTGGAGTGGGAGCCGAGTGGTTCCTTATATCGGACTCGTGTTGGTGAAGTCA
ttttaat putative branch site (score: 3)
tgcttttc putative PPT
agtgtaaatttgtatt TA-rich tract