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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttaaaagttcttgaatacttatatgtacattggaaggagttacatcatactttctcggacatatgatgcgaagttcgaagtttcctgttctttactagaagtgtgatatgtttatttgcggcttgggttgtagctccccagtgggttcagtcatgcttgtttgatgcagGCAGGTCAGCACGGACGATGTCTTCTCATCCATCTTCAGCAAGCTTGATGATGGATGCGGCAGCCGGGAACAAGATAGTTTCTCTAACTCCTACTCTAAG

Basic information

species Physcomitrella patens
transcript PP1S422_9V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161682|gb|FC339097.1|FC339097
EST:     TGAAGAGGTGCCAGCTAATTCTTGTGTGTTGCTTTATGTCGCTGCGTCAG                         G----TCAGCACGGACGATGTCTTCTCATCCATCTTCAGCAAGCTTGATGA
genomic: TGAAGAGGTGCCAGCTAATTCTTGTGTGTTGCTTTATGTCGCTGCGTCAGgtactttaaa ... tttgatgcagGCAGGTCAGCACGGACGATGTCTTCTCATCCATCTTCAGCAAGCTTGATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcggcttgggttgtagctccccagtgggttcagtcatgcttgtttgatgcagGCAGGTCAGCACGGACGATGTCTTCTCATCCATCTTCAGCAAGCTTGATGATGGATGCGGCAGCCGGGAACAAGATAGTTTCTCTAACTCCTACTCTAAG
                                            gtttgat  putative branch site (score: 5)
                                         cttgttt  CT-rich tract