1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acttcggcttgcacaacctgttcttgacagcctttctataccttctgtatgctgtaaaaaattgcagtgtagtaatcgttaggttcatttgattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCGCTCAGTTTTTGTCGGCAAT
species | Physcomitrella patens |
transcript | PP1S422_18V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|208368699|gb|DC940036.1|DC940036
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|208366662|gb|DC931319.1|DC931319
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|208389601|gb|DC945825.1|DC945825
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|100400310|gb|BY954413.1|BY954413
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|208376819|gb|DC906802.1|DC906802
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|162266936|gb|FC441789.1|FC441789
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCEST: gi|100421243|gb|BY976133.1|BY976133
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
EST: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAG ATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
genomic: ATTACGTGACATGCAAGCCAAGGTCGAAAAAGAAATGAGCGCTGTTCAAGgtttgaatat ... gattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTC
tgtatgctgtaaaaaattgcagtgtagtaatcgttaggttcatttgattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCGCTCAGTTTTTGTCGGCAAT
atttgat putative branch site (score: 5)
ttcatttgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcggcttgcacaacctgttcttgacagcctttctataccttctgtatgctgtaaaaaattgcagtgtagtaatcgttaggttcatttgattttacagATTCTGTGGGCAAAGATGGCTCTCCTGCCAATCGAGAGGAGGCGGATGCTCGCTCAGTTTTTGTCGGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - ttgcaca
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgta