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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgtatagcaaaggacggttttctgttcgcgaagtactgctgattacgccgatttcgtggcttgtattggaactaaaatttggcaattactttgtacagGCTCTTGAAAGCGGCTGAAGGTTGAAGCAGCAAGTACAGTGCAATGGGGAAATCAAACAAGACTACCAAATGGTTAAAGGCTGTAAAAAAGGCCTTCCGC

Basic information

species Physcomitrella patens
transcript PP1S421_26V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346351|gb|BJ178394.1|BJ178394
EST:     GTCCAATCAAATGATAAGCACAAGCTGGAATTCTGACATCAAGACTAAAT                         GCTCTTGAAAGCGGCTGAAGGTTGAAGCAGCAAGTACAGTGCAATGGGGAA
genomic: GTCCAATCAAATGATAAGCACAAGCTGGAATTCTGACATCAAAACTAAATgtaaacgttt ... ctttgtacagGCTCTTGAAAGCGGCTGAAGGTTGAAGCAGCAAGTACAGTGCAATGGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgccgatttcgtggcttgtattggaactaaaatttggcaattactttgtacagGCTCTTGAAAGCGGCTGAAGGTTGAAGCAGCAAGTACAGTGCAATGGGGAAATCAAACAAGACTACCAAATGGTTAAAGGCTGTAAAAAAGGCCTTCCGC
                          aactaaa  putative branch site (score: 2)
                                          ttacttt  putative PPT
                          aactaaaattt  TA-rich tract