1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggttaacggtactttgggttacgtttgggattcgtgtctcctggttgagaacgaccactatagctacggaatgatgtgtttttgctgtcaatgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAACACCGCTAATCTCATCCGGATTGAAGTTAACAAGGCTTTGCACATCGCT
species | Physcomitrella patens |
transcript | PP1S421_1V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAAEST: gi|18360843|gb|BJ192906.1|BJ192906
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
EST: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAAEST: gi|18360492|gb|BJ192555.1|BJ192555
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
EST: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG GGCTGGTCCACCGGTACCGGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAEST: gi|208369800|gb|DC944208.1|DC944208
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGG-AGCTGTCTCTCTCCGAAAGTTTTGTTATGA
EST: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAG GGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
genomic: GTGATCGTCTTGCTCTTTGTCTGGTCGAGCATTGCCGCGCTTCTTCACAGgtacttaact ... atgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAA
tgagaacgaccactatagctacggaatgatgtgtttttgctgtcaatgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAACACCGCTAATCTCATCCGGATTGAAGTTAACAAGGCTTTGCACATCGCT
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttaacggtactttgggttacgtttgggattcgtgtctcctggttgagaacgaccactatagctacggaatgatgtgtttttgctgtcaatgtgatcagGGCTGGTCCACCGGTACCGGAGCTGTCTCTCTCCGAAAGTTTTGTTATGAACACCGCTAATCTCATCCGGATTGAAGTTAACAAGGCTTTGCACATCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG