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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttttctctcgtaaaatattttattccccaaatattttacagtgtggaatgtcactagttcttatgactaacattgtcttgttggtgccctgttgtcagTGGGGATTTCGTAGATGTGAGGACATATGCTGGGTAAAAACTAACCGGGAAAATCCTACTCCAGCCTTGCGTCACGACTCCAACACTTTATTTCAACACT

Basic information

species Physcomitrella patens
transcript PP1S41_79V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100361493|gb|BY984033.1|BY984033
EST:     GGGTTGGAGATGCTGAAGGGCTCGAGCAAGGCCGCTTGTGTCTCAAGAAG                         TGGGGATTTCGTAGATGTGAGGACATATGCTGGGTAAAAACTAACCGGGAA
genomic: GGGTTGGAGATGCTGAAGGGCTCGAGCAAGGCCGCTTGTGTCTCAAGAAGgttctgttct ... ctgttgtcagTGGGGATTTCGTAGATGTGAGGACATATGCTGGGTAAAAACTAACCGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatgtcactagttcttatgactaacattgtcttgttggtgccctgttgtcagTGGGGATTTCGTAGATGTGAGGACATATGCTGGGTAAAAACTAACCGGGAAAATCCTACTCCAGCCTTGCGTCACGACTCCAACACTTTATTTCAACACT
                     gactaac  putative branch site (score: 1)
                                           ccctgtt  putative PPT
              ttcttat  TA-rich tract