1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agcgtgaaattttaaaacatgccgggtctagtattgatgtgtggcaaccattctgtagataatcatatttcctcacacttccctgccgatgttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTTCAGAAACTCGCTATTGTTGGTAGCAC
species | Physcomitrella patens |
transcript | PP1S41_70V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|18326829|gb|BJ158829.1|BJ158829
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAEST: gi|208372651|gb|DC944630.1|DC944630
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAA
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|208353940|gb|DC930094.1|DC930094
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|162241394|gb|FC418559.1|FC418559
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|162244584|gb|FC423446.1|FC423446
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|67721131|gb|BJ971390.1|BJ971390
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|162184696|gb|FC361934.1|FC361934
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|7148048|gb|AW509970.1|AW509970
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|18351691|gb|BJ183743.1|BJ183743
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|19780510|gb|BQ039570.1|BQ039570
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|37831031|gb|BJ589043.1|BJ589043
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|67720438|gb|BJ970697.1|BJ970697
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTNTCAGAGTGTGNGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGNGAAGTAACCCAGCTEST: gi|67709266|gb|BJ965082.1|BJ965082
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|162244583|gb|FC423445.1|FC423445
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|162241395|gb|FC418560.1|FC418560
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTEST: gi|18354254|gb|BJ186310.1|BJ186310
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCT
EST: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAG TTTGACACTATTTGTTGA
genomic: GGAAAGCCCATACCGCTCAAATACGTCAAGTTTCAGAGTGTGCGAAGgtgagtgtag ... gttttcacagTTTGACACTATTTGTTGA
aaccattctgtagataatcatatttcctcacacttccctgccgatgttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTTCAGAAACTCGCTATTGTTGGTAGCAC
tcctcac putative branch site (score: 13)
tgttttc putative PPT
tagataatcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgtgaaattttaaaacatgccgggtctagtattgatgtgtggcaaccattctgtagataatcatatttcctcacacttccctgccgatgttttcacagTTTGACACTATTTGTTGAGGACAATCAAGGAGGAGGCGAAGTAACCCAGCTTCAGAAACTCGCTATTGTTGGTAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - -aacatgc