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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGATTTTGGACGGCAAGCTTCAAAGCGCAGAGGCAGACGAGTTCGTTTACCACGAATCCATCGTCCATGCCGCTTTGCTTTATCACCCCAAgtaaatttctgtgttaaattatcagttactgcagtaatatataagtgatcaaagaattaattttacagccgcttcatgatgaaaagttacatgtgcttactgttttgctttggtcttgcag

Basic information

species Physcomitrella patens
transcript PP1S41_50V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S41_50V6.2 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ38831 (Selaginella moellendorffii), 5'ss of exon 3
GTCTTGATTTTGGACGGCAAGCTTCAAAGCGCAGAGGCAGACGAGTTCGTTTACCACGAATCCATCGTCCATGCCGCTTTGCTTTATCACCCCAAgtaaatttctgtgttaa-attatcagttactgcagtaatatataagtgatcaaagaattaattttacagc-cgcttcatgatgaaaagttacatgtgcttactgttttgctttggtcttgcag
|| |||||  | || || ||||| ||||| || ||||| ||||||||||| ||||| || | | |||||||  | || ||||| ||||||||||||||| |          | |      | |  | |  |  | |     || |        ||| |||  | | | |||  || |  |                                      
GTGTTGATCCTCGATGGAAAGCTCCAAAGTGCCGAGGCCGACGAGTTCGTCTACCATGAGTGCCTCGTCCACCCTGCATTGCTCTATCACCCCAAgtaactcatctcacagatacctctcgctctttctctttttttctcttgctatctcggctaagtttcgatctctcttggtgctccag-------------------------------------

upper sequence: PP1S41_50V6.2 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ15604 (Selaginella moellendorffii), 5'ss of exon 3
GTCTTGATTTTGGACGGCAAGCTTCAAAGCGCAGAGGCAGACGAGTTCGTTTACCACGAATCCATCGTCCATGCCGCTTTGCTTTATCACCCCAAgtaaat--ttctgtgttaaattatcagttactgcagtaatatataagtgatcaaagaattaattttacagccgcttcatgatgaaaagttacatgtgcttactgttttgctttggtcttgcag
|| |||||  | || || ||||| ||||| || ||||| ||||||||||| ||||| || | | |||||||  | || ||||| ||||||||||||||| |  |         |  | ||  |   |    |  |      |  |||   |  | | |||      | |||  || |  |                                      
GTGTTGATCCTCGATGGAAAGCTCCAAAGTGCCGAGGCCGACGAGTTCGTCTACCATGAGTGCCTCGTCCACCCTGCATTGCTCTATCACCCCAAgtaactcatctcacagatacctctcgctctttctcttttttctcttgctatctc-ggctaagtttcgatctctcttggtgctccag-------------------------------------