1 5' 3' | 2 5' 3' |
...aattgaaattctgctgttagtttttatccttgcttctgaatgtcttctgaagtttttttaagaatattcttatagtttctttatttgacatggctgacagGAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCCAGGGACTGGACTTCAGAATCGGTGATGCTCTGGGAAGTGGGTTTCTAGG
species | Physcomitrella patens |
transcript | PP1S41_41V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAG GAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCCEST: gi|162168751|gb|FC344741.1|FC344741
genomic: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAGgtaggaccca ... tggctgacagGAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCC
EST: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAG GAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCCEST: gi|162160675|gb|FC337211.1|FC337211
genomic: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAGgtaggaccca ... tggctgacagGAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCC
EST: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAG GAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCC
genomic: AAGGCTTGCACCTATTGGTGTCCACGTAGCTCTTCTTTTGATTATGGCAGgtaggaccca ... tggctgacagGAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCC
tctgaagtttttttaagaatattcttatagtttctttatttgacatggctgacagGAGGAACTGTTAGTGCTGCATGCAGTCTGAGGGGTACGGTCATGGTTCCCCAGGGACTGGACTTCAGAATCGGTGATGCTCTGGGAAGTGGGTTTCTAGG
atttgac putative branch site (score: 4)
agtttttttaagaata TA-rich tract