1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcattcctacacacctatgcatcctgtaattgctctccttctccttgtctgcttagggtgttatctcacttctcttagaagggagcttgtggtttctgttcttagggcaggaaggtcaccctcacaacaatttgtgctgctttgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCGCTACTACAGATGGCTCTCTGCAACAACTGCAAAAAACTTCGCAACTGCT
species | Physcomitrella patens |
transcript | PP1S41_32V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGCCAGGATCTTCTAGTGGAGAATCACCATTTGAGCTACCTCATCCAG ACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCGEST: gi|67692312|gb|BJ952545.1|BJ952545
genomic: GCTGCCAGGATCTTCTAGTGGAGAATCACCATTTGAGCTACCTCATCCAGgttcattcct ... tgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCG
EST: GCTGCCAGGATCTTCTAGTGGAGAATCACCATTTGAGCTACCTCATCCAG ACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCGEST: gi|208381915|gb|DC923439.1|DC923439
genomic: GCTGCCAGGATCTTCTAGTGGAGAATCACCATTTGAGCTACCTCATCCAGgttcattcct ... tgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCG
EST: GCTGCCAGGATCTTNTAGTGGAGAATCACCATNTGAGCTACCTCATCCAG ACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCG
genomic: GCTGCCAGGATCTTCTAGTGGAGAATCACCATTTGAGCTACCTCATCCAGgttcattcct ... tgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCG
gttcttagggcaggaaggtcaccctcacaacaatttgtgctgctttgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCGCTACTACAGATGGCTCTCTGCAACAACTGCAAAAAACTTCGCAACTGCT
ccctcac putative branch site (score: 9)
ctgcttt putative PPT
aacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattcctacacacctatgcatcctgtaattgctctccttctccttgtctgcttagggtgttatctcacttctcttagaagggagcttgtggtttctgttcttagggcaggaaggtcaccctcacaacaatttgtgctgctttgtaccgcagACCGAAAGAATGGGTTATGATAGCCGACAACTGTCAAACGAAGGCGGGCCGCTACTACAGATGGCTCTCTGCAACAACTGCAAAAAACTTCGCAACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG