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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGACCCTGCGAAAGCATTTGACACAGTATTAGGGCTCATCACTCGGCTGGCACAACATGGTCTAATACATTGTGATTTCAACGAGTTCAATCTCATGgtatgcatatgcgtttcgtggactctctctcgctctctctctctcaagaaattcgtattcttcatcaagttctaatcttctgggtagtattcttctgaatgtgggataaaaatacatcggaaagtcgtcagtgtgctaaaagagtggcttacag

Basic information

species Physcomitrella patens
transcript PP1S40_20V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_20V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 7
CTCAGACCCTGCGAAAGCATTTGACACAGTATTAGGGCTCATCACTCGGCTGGCACAACATGGTCTAATACATTGTGATTTCAACGAGTTCAATCTCATGgtatg----catatgcgtttcgtggactctctctcgctctctctctctcaagaaattcgtattcttcatcaagttctaatct----tctgggtagtattcttctgaatgtgggataaaaata-catcggaaagtcgtcagtgtgc-taaaagagtggcttacag
   | | || |   | |  ||||||||| |  | || ||  |   |||  ||||  | ||||| || |||||||||||||| |||||||||||| |||||||||     | | | | |||  |    || |  | |   || |||| |       | |  |   |  | || ||   ||  |        ||| ||| | ||||  ||      |   ||||   ||   |  |  |   | ||  |  |    ||  || |||
ACAAAATCCAGACGATGTTTTTGACACAATTCTTGGCCTTGTTGTTCGTTTGGCGGAGCATGGGCTGATACATTGTGATTTTAACGAGTTCAATATCATGgtattgcttcttgtaccttttataagttcaca-tagaattcactctttggttgcctgcaaacagtcaaacaggtgtcaaggtagaacaatggttgtagttttctagattaaacttctgaataatgtcaccatattttttctttgtgtgtattgatgttttgcag

upper sequence: PP1S40_20V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ19722 (Selaginella moellendorffii), 5'ss of exon 7
CTCAGACCCTGCGAAAGCATTTGACACAGTATTAGGGCTCATCACTCGGCTGGCACAACATGGTCTAATACATTGTGATTTCAACGAGTTCAATCTCATGgtatgcatatgcgtttcgtggactctctctcgctctctctctctcaagaaattcgtattcttcatcaagttctaatcttctgggtagtattcttctgaatgtgggataaaaatacatcggaaagtcgtcagtgtgctaaaagagtggcttacag
     | || ||   ||  |||||||| ||| |  | || |||  ||| || ||  |||| || || || || |||||||||||||||||||||||| ||||| |     |  || ||     |  || | | |   | ||||| ||  | |||                                                                                                    
GAAGAATCCAGCACTAGTGTTTGACACGGTAATTAGCCTGATCGTTCGTCTTGCTGAACACGGCCTTATTCACTGTGATTTCAACGAGTTCAATCTCTTGgtaag-----gaattccggccttttgctttggat---tttctctgaaagagttctggcag----------------------------------------------------------------------------------------------

upper sequence: PP1S40_20V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ10419 (Selaginella moellendorffii), 5'ss of exon 7
CTCAGACCCTGCGAAAGCATTTGACACAGTATTAGGGCTCATCACTCGGCTGGCACAACATGGTCTAATACATTGTGATTTCAACGAGTTCAATCTCATGgtatgcatatgcgtttcgtggactctctctcgctctctctctctcaagaaattcgtattcttcatcaagttctaatcttctgggtagtattcttctgaatgtgggataaaaatacatcggaaagtcgtcagtgtgctaaaagagtggcttacag
     | || ||    |  |||||||| ||| |  | || |||  ||| || ||  |||| || || || || |||||||||||||||||||||||| ||||| | | ||||    | |    |  || | | |   | ||||| ||  | |||                                                                                                    
GAAGAATCCAGCACTCGTGTTTGACACGGTAATTAGCCTGATCGTTCGTCTTGCTGAACACGGCCTTATTCACTGTGATTTCAACGAGTTCAATCTCTTGgtaagga-atgcacgcctt----ttgctttggat---tttctctgaaagagttctggcag----------------------------------------------------------------------------------------------