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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggacattgaatgttgtgggggatgggcgatgttcgaggtactgaggttcatatcaaaaagttttgttatttgatgagcattggcttgtggttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGTGCGAGTTGGGAAGGCCTTGCCCGCTGTGGCATTGGCGATTGGGGCCGCG

Basic information

species Physcomitrella patens
transcript PP1S39_206V6.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191264|gb|FC366838.1|FC366838
EST:     CTCGATTGAAACGCGGGTGTTGTAGAATCCCTTG                         AGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGT
genomic: CTCGATTGAAACGCGGGTGTTGTAGAATCCCTTGgtaggatttc ... gttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGT
EST: gi|67573422|gb|BJ946246.1|BJ946246
EST:     TCGATTGAAACGCGGGTGTTGTAGAA-CCCNTTG                         AGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCG
genomic: TCGATTGAAACGCGGGTGTTGTAGAATCCC-TTGgtaggatttc ... gttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCG
EST: gi|18345640|gb|BJ177683.1|BJ177683
EST:     GTGTCTCGATTGAAACGCGGGTGTTGTAGAATCCCTTG                         AGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGT
genomic: GTGTCTCGATTGAAACGCGGGTGTTGTAGAATCCCTTGgtaggatttc ... gttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcatatcaaaaagttttgttatttgatgagcattggcttgtggttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGTGCGAGTTGGGAAGGCCTTGCCCGCTGTGGCATTGGCGATTGGGGCCGCG
                       atttgat  putative branch site (score: 5)
                                              ttgcttc  putative PPT
     atatcaaaaagttttg  TA-rich tract