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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggacattgaatgttgtgggggatgggcgatgttcgaggtactgaggttcatatcaaaaagttttgttatttgatgagcattggcttgtggttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGTGCGAGTTGGGAAGGCCTTGCCCGCTGTGGCATTGGCGATTGGGGCCGCG

Basic information

species Physcomitrella patens
transcript PP1S39_206V6.4
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcatatcaaaaagttttgttatttgatgagcattggcttgtggttgcttcagAGAGTGGATAGTGGGGGAGCTGTTGAGAGGTATGGCGTCGTCATTGAGCGTGCGAGTTGGGAAGGCCTTGCCCGCTGTGGCATTGGCGATTGGGGCCGCG
                       atttgat  putative branch site (score: 5)
                                              ttgcttc  putative PPT
     atatcaaaaagttttg  TA-rich tract