1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggaaggtttagtgcagtgatgtttacctgctcggcgcttgaatgatttagttgtgtgagattattttaagattgatgtaactacttgattttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGCAAGATGGGGAGCACAGATGAAGATGCCGACATTCGGCGTCCGTCGATAA
species | Physcomitrella patens |
transcript | PP1S39_165V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTTGCTGTTTCGGAGGAGACTCTCACCTAATTTTTAAAGCTTTAG TTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGCEST: gi|162204500|gb|FC380805.1|FC380805
genomic: TATTTGCTGTTTCGGAGGAGACTCTCACCTAATTTTTAAAGCTTTAGgttagtctgt ... tttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGC
EST: TTATTTGCTGTTTCGGAGGAGACTCTCACCTGATTTTTAAAGCTTTAG TTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGCEST: gi|67575964|gb|BJ948788.1|BJ948788
genomic: TTATTTGCTGTTTCGGAGGAGACTCTCACCTAATTTTTAAAGCTTTAGgttagtctgt ... tttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGC
EST: TTATTTGCTGTTTCGGAGGAGACTCTCACCTAATTTTTAAAGCTTTAG TTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGC
genomic: TTATTTGCTGTTTCGGAGGAGACTCTCACCTAATTTTTAAAGCTTTAGgttagtctgt ... tttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGC
atttagttgtgtgagattattttaagattgatgtaactacttgattttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGCAAGATGGGGAGCACAGATGAAGATGCCGACATTCGGCGTCCGTCGATAA
tttttt CT-rich tract
attattttaagattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaggtttagtgcagtgatgtttacctgctcggcgcttgaatgatttagttgtgtgagattattttaagattgatgtaactacttgattttttgacagTTCAAAACTGGAATCCGCTTCCGCGTAGAATTGTACATCATGCAAGAGGGCAAGATGGGGAGCACAGATGAAGATGCCGACATTCGGCGTCCGTCGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG