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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGGACCAGGAGCTAATTGGACGATTCCTGTCGGGTTTTGAATCGAGCAAACGATTGTGCGTTACATTCGTGCTGAGTAAATAGCCATGGGTATCAAGgtgagagtgaacgagagagagagagagagagagagagagagagagagacattgtctggtttgcgacgctgtgtaatcgtatcttaagtttactgttgttc...

Basic information

species Physcomitrella patens
transcript PP1S39_160V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18348872|gb|BJ180921.1|BJ180921
EST:     AAACGATTGTGCGTTACATTCGTGCTGAGTAAATAGCCATGGGTATCAAG                         GGATTAACCAAGCTGATTGCGGACAATGCTCATGGCGCAGTGAAGGAACAA
genomic: AAACGATTGTGCGTTACATTCGTGCTGAGTAAATAGCCATGGGTATCAAGgtgagagtga ... catataacagGGATTAACCAAGCTGATTGCGGACAATGCTCATGGCGCAGTGAAGGAACAA
EST: gi|18345050|gb|BJ177091.1|BJ177091
EST:     AAACGATTGTGCGTTACATTCGTGCTGAGTAAATAGCCATGGGTATCAAG                         GGATTAACCAAGCTGATTGCGGACAATGCTCATGGCGCAGTGAAGGAACAA
genomic: AAACGATTGTGCGTTACATTCGTGCTGAGTAAATAGCCATGGGTATCAAGgtgagagtga ... catataacagGGATTAACCAAGCTGATTGCGGACAATGCTCATGGCGCAGTGAAGGAACAA