1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcttgtcatgaagtctcttaacttttacctgttgctaaacatcatcaaatgtagtgtcatgtctttcgagttatttttatgtaactgattcgaaatgaagaactggctcaatatgcgaatgtgacatgcaaaaatattcgtcgttatattacgtaatgagataacatcttcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA
species | Physcomitrella patens |
transcript | PP1S39_119V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|162216707|gb|FC393579.1|FC393579
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|162216706|gb|FC393578.1|FC393578
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|37844130|gb|BJ602138.1|BJ602138
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|18337920|gb|BJ169944.1|BJ169944
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|208371622|gb|DC952264.1|DC952264
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAEST: gi|208351294|gb|DC922073.1|DC922073
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
EST: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAG GAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
genomic: GCAAGCAGACTGAGCTGCAGCATCTGAACAATGAAATTCAGCTTCTCCAGgtgagcttgt ... tcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAA
catgcaaaaatattcgtcgttatattacgtaatgagataacatcttcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA
agataac putative branch site (score: 20)
catcttccttt CT-rich tract
ttatattacgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttgtcatgaagtctcttaacttttacctgttgctaaacatcatcaaatgtagtgtcatgtctttcgagttatttttatgtaactgattcgaaatgaagaactggctcaatatgcgaatgtgacatgcaaaaatattcgtcgttatattacgtaatgagataacatcttcctttacagGAGGAGTTGGAGGTTTTGAACAACACACCTCTCGCGTCGAAGGCCTGCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG