1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcatgtctaagtattagtttctgactgaatttatgatgagaatgtgtggatatctgcaagctttgtacgagtatagctgaaaataattctagattttagggtagaagtatttaacaccttttctggtgtttgaatatgtagATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTCATACCAAGGGTCTCACCTGGGGCAACGCTGTATATGTTCGCCTCTTTCT
species | Physcomitrella patens |
transcript | PP1S39_104V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCACGGCATTTTCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTG ATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTCEST: gi|162159972|gb|FC336225.1|FC336225
genomic: GCACGGCATTTTCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTGgtgagcatgt ... gaatatgtagATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTC
EST: GCACGGCATTTTCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTG ATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTCEST: gi|162158712|gb|FC335066.1|FC335066
genomic: GCACGGCATTTTCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTGgtgagcatgt ... gaatatgtagATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTC
EST: TCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTG ATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTC
genomic: TCACAATATGCTGTTGGCTGTCAAATAGTCAGAAACTTGgtgagcatgt ... gaatatgtagATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTC
ttctagattttagggtagaagtatttaacaccttttctggtgtttgaatatgtagATGTGCAGGAAGAACTTGGGCTACTATTGTCCACTGTTGAAAAGACTCTTCATACCAAGGGTCTCACCTGGGGCAACGCTGTATATGTTCGCCTCTTTCT
atttaac putative branch site (score: 3)
aagtatttaa TA-rich tract