1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
species | Physcomitrella patens |
transcript | PP1S399_19V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCEST: gi|18368205|gb|BJ200290.1|BJ200290
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCEST: gi|67718678|gb|BJ968937.1|BJ968937
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCEST: gi|18331192|gb|BJ163201.1|BJ163201
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGAEST: gi|100448742|gb|CJ973041.1|CJ973041
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGA
EST: AACAAGACGAANCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCEST: gi|18344976|gb|BJ177017.1|BJ177017
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCEST: gi|100369024|gb|BY984986.1|BY984986
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
EST: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTA CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
genomic: AACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgacc ... ttgcgcgcagCCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG