Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgcatcatctattttcattgaatatgaacttgtcattgaatctattctggtgtttccggggatggcgttggcaacgtagtgtgctgatgatgtgtgaacatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGTCTGAAGACCAGGAAGTATGCCGAGGTTGTGCCAGCGTTGACGAACATGG

Basic information

species Physcomitrella patens
transcript PP1S399_19V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162230916|gb|FC407171.1|FC407171
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162199027|gb|FC372378.1|FC372378
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162169125|gb|FC346015.1|FC346015
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|18334113|gb|BJ166129.1|BJ166129
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37824108|gb|BJ582174.1|BJ582174
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37829031|gb|BJ587043.1|BJ587043
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162168331|gb|FC344645.1|FC344645
EST:     GGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: GGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162185337|gb|FC360911.1|FC360911
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|7582967|gb|AW699131.1|AW699131
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|208350801|gb|DC925932.1|DC925932
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGNGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162242610|gb|FC419239.1|FC419239
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37844121|gb|BJ602129.1|BJ602129
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162199028|gb|FC372379.1|FC372379
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162185453|gb|FC362548.1|FC362548
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37852242|gb|BJ610250.1|BJ610250
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|18333927|gb|BJ165943.1|BJ165943
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|19788718|gb|BQ040874.1|BQ040874
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|22492730|gb|BU052653.1|BU052653
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCCGGTGTTGG
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGC-GGTGTTGG
EST: gi|162240578|gb|FC419355.1|FC419355
EST:     GGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: GGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162202035|gb|FC377241.1|FC377241
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162164319|gb|FC340990.1|FC340990
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162169967|gb|FC345907.1|FC345907
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37820974|gb|BJ579040.1|BJ579040
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162173837|gb|FC349429.1|FC349429
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162171093|gb|FC347707.1|FC347707
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162189798|gb|FC365540.1|FC365540
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|18336645|gb|BJ168668.1|BJ168668
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162266876|gb|FC441755.1|FC441755
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37826426|gb|BJ584438.1|BJ584438
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|7584055|gb|AW699954.1|AW699954
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37824956|gb|BJ583022.1|BJ583022
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162153730|gb|FC329133.1|FC329133
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162235721|gb|FC411024.1|FC411024
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162277616|gb|FC453247.1|FC453247
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37848165|gb|BJ606173.1|BJ606173
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|18341070|gb|BJ173103.1|BJ173103
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37827211|gb|BJ585223.1|BJ585223
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162275653|gb|FC451655.1|FC451655
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162160497|gb|FC336887.1|FC336887
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162152924|gb|FC329226.1|FC329226
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162187121|gb|FC362903.1|FC362903
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162231361|gb|FC406784.1|FC406784
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|16137552|gb|BI894416.1|BI894416
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCNGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|22132800|gb|BQ827369.1|BQ827369
EST:     CGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: CGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162243204|gb|FC415556.1|FC415556
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162235722|gb|FC411025.1|FC411025
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162253311|gb|FC429737.1|FC429737
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37852900|gb|BJ610908.1|BJ610908
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162170068|gb|FC345121.1|FC345121
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37824626|gb|BJ582692.1|BJ582692
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162170067|gb|FC345120.1|FC345120
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162189828|gb|FC365557.1|FC365557
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCCCAAA                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|6167646|gb|AW145910.1|AW145910
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTGGGAGTCCAAGGTATTG
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTG
EST: gi|37824179|gb|BJ582245.1|BJ582245
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162152923|gb|FC329225.1|FC329225
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162171047|gb|FC346946.1|FC346946
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162155002|gb|FC331420.1|FC331420
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162181009|gb|FC358663.1|FC358663
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162168195|gb|FC344925.1|FC344925
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|67720741|gb|BJ971000.1|BJ971000
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162185452|gb|FC362547.1|FC362547
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37826435|gb|BJ584447.1|BJ584447
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37844062|gb|BJ602070.1|BJ602070
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162172779|gb|FC348368.1|FC348368
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162168330|gb|FC344644.1|FC344644
EST:     GGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: GGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|208350682|gb|DC918142.1|DC918142
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37839199|gb|BJ597207.1|BJ597207
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162168194|gb|FC344924.1|FC344924
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|67727093|gb|BJ977352.1|BJ977352
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|7583149|gb|AW699313.1|AW699313
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162173838|gb|FC349430.1|FC349430
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|16137655|gb|BI894519.1|BI894519
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37852247|gb|BJ610255.1|BJ610255
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162167715|gb|FC344029.1|FC344029
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162195641|gb|FC370304.1|FC370304
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|67697316|gb|BJ957549.1|BJ957549
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|18338211|gb|BJ170235.1|BJ170235
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37851265|gb|BJ609273.1|BJ609273
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162167716|gb|FC344030.1|FC344030
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37831020|gb|BJ589032.1|BJ589032
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162151973|gb|FC328403.1|FC328403
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|162189842|gb|FC365558.1|FC365558
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
EST: gi|37834857|gb|BJ592869.1|BJ592869
EST:     ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAG                         ATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT
genomic: ACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 25 (downstream exon)
Score: 18

TGAGGGTGTGCACTACGGAGCTGGAATTGGTCCCGGCGTGTACGATATTCACTCCCCTCGCATTCCACCAACAGAGGAGATGGCTGACCGTGCTCGCAAGgtaatgtgca ... acatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGTCTGAAGACCAGGAAGTATGCCGAGGTTGTGCCAGCGTTGACGAACATGG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccggggatggcgttggcaacgtagtgtgctgatgatgtgtgaacatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGTCTGAAGACCAGGAAGTATGCCGAGGTTGTGCCAGCGTTGACGAACATGG
                             tgctgat  putative branch site (score: 18)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgtgcatcatctattttcattgaatatgaacttgtcattgaatctattctggtgtttccggggatggcgttggcaacgtagtgtgctgatgatgtgtgaacatgtgcagATGTTGGCGGTGTTGGAGTCCAAGGTATTGTGGATCAACCCTGACTGCGGTCTGAAGACCAGGAAGTATGCCGAGGTTGTGCCAGCGTTGACGAACATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA