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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttctcacccgaatcttttctgattatcgctcacaattccatcttgtgctcttttttactaggcggagttacctagtgatttgtgtttggttttaagatgtggctgatgtaaaacccttgttgggagttgcatctcagGTGAATGGATTGTCATTCAAGCCAGGTACGCATCTGCTAGCAACAGCATCAGATGATGCCACGAGCATGATTTGGGATGCCGAAAAGGGAATCTCTGTAA

Basic information

species Physcomitrella patens
transcript PP1S398_19V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S398_19V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ20027 (Selaginella moellendorffii), 3'ss of exon 1
gttttcttctcacccgaatcttttctgattatcgctcacaattccatcttgtgctcttttttactaggcggagttacctagtgatttgtgtttggttttaagatgtggctgatgtaaaacccttgttgggagttgca-tctcagGTGAATGGATTGTCATTCAAGCCAGGTACGCATCTGCTAGCAACAGCATCAGATGATGCCACGAGCATGATTTGGGATGCCGAAAAGGGAATCTCTGTAA
                                                                                    | | |  |   | ||      |  |   ||||      ||| |     | ||| || ||||||||||||||||||||||||| ||| ||  |  | ||||| ||||| || || ||| ||||  | || || |||||||||||||  ||| |  | || |
-------------------------------------------------------------------------------gtcagtcttttctctctcttctatctttccctttgta-----tttgctcatgctcgcactcgcagGTGAATGGATTGTCATTCAAGCGAGGAACTAACTTACTAGCTACAGCTTCTGACGATACCACTTGTATCATATGGGATGCCGAAAGAGGAGTTGCGGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttggttttaagatgtggctgatgtaaaacccttgttgggagttgcatctcagGTGAATGGATTGTCATTCAAGCCAGGTACGCATCTGCTAGCAACAGCATCAGATGATGCCACGAGCATGATTTGGGATGCCGAAAAGGGAATCTCTGTAA
                  ggctgat  putative branch site (score: 4)
       ttttaagat  TA-rich tract