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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTCACGCTATGGTATCGAGCTCCGGAGGTCTTGCTGGGAGCCAGTCATTACTCCACGTCTGTGGATGTGTGGTCTGTGGGCTGCATATTTGgtatgtagctgtcacttgttggccatgttgaaccgtatttccctgatacgtaaagttgattgtttgagttttctaagtgcttacaatgtgcgcttcaattttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S397_37V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S397_37V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT1G76540.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTGTCACGCTATGGTATCGAGCTCCGGAGGTCTTGCTGGGAGCCAGTCATTACTCCACGTCTGTGGATGTGTGGTCTGTGGGCTGCATATTTGgtatgtagctgtcacttgttggccatgttgaac-cgtatttccctgatacgtaaagttgattgtttgagttttctaagtgcttacaatgtgcgcttcaattttgtgcag
||  | || || |||||| ||||||| |||||  | || || ||||  |||||||| ||  |||||||| |||||||||| |||||||||||||||||||        ||| |  | |  |||||   |     || |||  |  | |  || | |   | |       ||    | ||| ||| | |||||   || | |||
ATATTAACTCTTTGGTATAGAGCTCCAGAGGTTCTTCTTGGTGCCACCCATTACTCTACAGCTGTGGATATGTGGTCTGTTGGCTGCATATTTGgtatgtgtt-----cttttcagactcgttgatttcactagtcactgcgatatcatcttaagttactaaacaac--aacaattaacattgttc-cttcaccatt-tacag