1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtctagcttttactcacagctgcaggccaaatcaacattgtagcgttgaaattggaaccgcattcctcgtgattaaatttgaaggtctaatattaacggttagcttgatggctttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATAATCCTGGAGCAAGGATCACACGAGCAGCTAATGAGCAAAGGTGAAGGC
species | Physcomitrella patens |
transcript | PP1S397_2V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCG TTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATEST: gi|18334960|gb|BJ166978.1|BJ166978
genomic: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCGgtgagtctag ... ttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGAT
EST: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCG TTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATEST: gi|162162724|gb|FC337778.1|FC337778
genomic: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCGgtgagtctag ... ttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGAT
EST: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCG TTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATEST: gi|162168145|gb|FC343835.1|FC343835
genomic: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCGgtgagtctag ... ttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGAT
EST: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCG TTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGAT
genomic: GCATTGGATCGGATGATGGTTGGCCGAACGACTGTGGTTGTTGCGCATCGgtgagtctag ... ttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGAT
gtgattaaatttgaaggtctaatattaacggttagcttgatggctttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATAATCCTGGAGCAAGGATCACACGAGCAGCTAATGAGCAAAGGTGAAGGC
ctttatt CT-rich tract
tctaatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctagcttttactcacagctgcaggccaaatcaacattgtagcgttgaaattggaaccgcattcctcgtgattaaatttgaaggtctaatattaacggttagcttgatggctttattggcagTTTATCCACCATAGCCTCTGCGGATACGATAGCTGTAATGCAAGATGGGATAATCCTGGAGCAAGGATCACACGAGCAGCTAATGAGCAAAGGTGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG