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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttgtacaaataattatagagattatgtatagaattgattatattgatagtattttaaacttgtacagtcttctatgccataataatgtttacatatcttactacaaactcaagttagtaagactaggctgatatgtagtatatgcttcattttgattttattattgatttttgtatgaattttttaatttcagGTTGATATATTTGAGGAAGAAATTGTTGGTAGAGCACAATATTTATTACAAATAAAACAACTATGTGCAAATGAAGTGAAGGCATTGTATCTTGTTGGAA

Basic information

species Physcomitrella patens
transcript PP1S396_25V6.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgcttcattttgattttattattgatttttgtatgaattttttaatttcagGTTGATATATTTGAGGAAGAAATTGTTGGTAGAGCACAATATTTATTACAAATAAAACAACTATGTGCAAATGAAGTGAAGGCATTGTATCTTGTTGGAA
                                           ttttaat  putative branch site (score: 3)
                                         tttttt  CT-rich tract
          attttgattttattat  TA-rich tract