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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTGTATCATCATTATTGTGCAATGGTGATGGCACTGGTGAGTCTTACATGGGGTCATCCTAGTTGCATTCGCAAACAGgtacgtccgtacacgggcaatatttacttcgcgtgacatcgttaacttttatgagagagaggttatgttaccttcctgtccctatcagtccaaagaattc...

Basic information

species Physcomitrella patens
transcript PP1S359_2V6.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S359_2V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 6
GTGGGTGTATCATCATTATTGTGCAATGGTGATGGCACTGGTGAGTCTTACATGGGGTCATC-----CTAGTTGCATTCGCAAACAGgtacgtccgtacacgggcaatatttacttcgcgtgacatcgttaacttttatgagagag-aggttatgttacc-ttcctgtccctatcagtccaaagaattc
|||| | ||||||||||||||||| ||||||||||| || |||||||| || ||||    |      | |   |  |  ||||| | | | ||  ||   |  ||  | |  |  | |  |    || |    ||||||     |  | ||| ||| ||  ||  |   |  |  | | ||   |    
GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttggtttcctagccctgtgcatatagttt--tttcttccttttttatttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcag---

upper sequence: PP1S359_2V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 5
GTGGGTGTATCATCATTATTGTGCAATGGTGATGGCACTGGTGAGTCTTACATGGGGTCATC-----CTAGTTGCATTCGCAAACAGgtacgtccgtacacgggcaatatttacttcgcgtgacatcgttaacttttatgagagagaggttatgttacc-ttcctgtccctatcagtccaaagaattc
|||| | |||||||| |||||||| ||||||||||| || |||||||| || ||||    |      | |   |  |  ||||| | | | ||  ||   |  ||  |    |    |  |    |   |  |||||     |   |  || ||| ||  ||  |   |  |  | | ||   |    
GTGGATATATCATCACTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcctagccctgcgcatacagttt----tttcttcctttttgtttaattattttgtgtaactattgtttgtctcaataatgcatgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67724944|gb|BJ975203.1|BJ975203
EST:     TGGCACTGGTGAGTCTTACATGGGGTCATCCTAGTTGCATTCGCAAACAG                         CAAGGAGTGCAGCTGTCTCTTGGATGGGCTGTAATGCAAGGTGTAGCCATG
genomic: TGGCACTGGTGAGTCTTACATGGGGTCATCCTAGTTGCATTCGCAAACAGgtacgtccgt ... gcgtctgcagCAAGGAGTGCAGCTGTTTCTTGGATGGGCTGTAATGCAAGGTGTAGCCATG