1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGGGCTCTCCAGTGTTCGATAAGCTGGAAGCTGAGTTGGCCAAGGCTGTCATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgcttctcggatctctgataatgacattcttaaatgactcgattttgatgtatttatttgatggaacgtagtcttaaattgattaccttttcttcagcaaatcacattagttttaggcaatttgaaagagagtgaacgatactgcttgaatctaactatggttgaacgtggtgtgtaggatcactccag
species | Physcomitrella patens |
transcript | PP1S28_168V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAGEST: gi|208390477|gb|DC933734.1|DC933734
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTG GEST: gi|208390477|gb|DC933734.1|DC933734
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgct ... atcactccag-
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTG GEST: gi|208390477|gb|DC933734.1|DC933734
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgct ... atcactccag-
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTG GEST: gi|208390477|gb|DC933734.1|DC933734
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgct ... atcactccag-
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTG GEST: gi|162241958|gb|FC415769.1|FC415769
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgct ... atcactccag-
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAGEST: gi|100385742|gb|BY987807.1|BY987807
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTG CGTGGTTCGGAGCACAACGATGAGTTCTATGTTGACGAACATAATAATGTGEST: gi|162191762|gb|FC367495.1|FC367495
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgct ... atcactccagCGTGGTTCGGAGCACAACGATGAGTTCTATGTTGACGAACATAATAATGTG
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAGEST: gi|162241957|gb|FC415768.1|FC415768
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
EST: TCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAGEST: gi|37826731|gb|BJ584743.1|BJ584743
genomic: TCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAGEST: gi|162150110|gb|FC326823.1|FC326823
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
EST: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGGATCACTCCAG
genomic: CATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGG-TTT--T-G----CT---Ggtactatgct ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGCTCTCCAGTGTTCGATAAGCTGGAAGCTGAGTTGGCCAAGGCTGTCATGTCTCTTCCGGCCACCAAAGGATTCGAGATTGGAAGCGGTTTTGCTGgtactatgcttctcggatctctgataatgacattcttaaatgactcgattttgatgtatttatttgatggaacgtagtcttaaattgattaccttttcttcagcaaatcacattagttttaggcaatttgaaagagagtgaacgatactgcttgaatctaactatggttgaacgtggtgtgtaggatcactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG