Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18367980|gb|BJ200064.1|BJ200064EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18330761|gb|BJ162767.1|BJ162767EST: ACAGCAACAANGCAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18349621|gb|BJ181671.1|BJ181671EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|67712633|gb|BJ966082.1|BJ966082EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|67578554|gb|BJ950721.1|BJ950721EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|67712759|gb|BJ966208.1|BJ966208EST: ACAGCAACAANGAAATTTTCTTAAGANAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|67575001|gb|BJ947825.1|BJ947825EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18357655|gb|BJ189714.1|BJ189714EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18342532|gb|BJ174567.1|BJ174567EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18347003|gb|BJ179049.1|BJ179049EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|162178680|gb|FC353949.1|FC353949EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGCAAGATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18326411|gb|BJ158410.1|BJ158410EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18363241|gb|BJ195313.1|BJ195313EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|162197953|gb|FC373981.1|FC373981EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGCAAGATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|67575021|gb|BJ947845.1|BJ947845EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
EST:
gi|18349581|gb|BJ181631.1|BJ181631EST: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGAT GCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
genomic: ACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
20 (upstream exon),
35 (downstream exon)
Score:
17CTTCCAGGCGGAGATCAACCAGTTGCTTAGTTTGATTATCAACACTTTCTACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttct ... aatatggtagGCCTTGGACAAGATTAGGTTTGAGTCCCTGACCGACAAGAGTAAAATGGATGGGCAGCCCGAGCTGTTCATTCATATTGTTCCCGACAAGGCCAACAACA
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