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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac...

Basic information

species Physcomitrella patens
transcript PP1S207_23V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaa--attatagtcatatattaatatcctttgtct-taacac-----------------------------
|  |  | |||||||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| || || || ||| |  | || |||| ||||  | |  | |  | ||  || | |   | | | |||| ||    ||  |   |   || |  |||  |   || ||||        |||| | | ||||                             
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaa-cttattattccatttt-catttttttaacttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 10
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaat-atcctttgtcttaacac-----
| ||  || ||||||| ||||||||||||||||| ||||| || |||||||| || || || ||||||||||| || ||||| ||  |  | ||||||| |||        ||| ||||| ||     | | ||  ||   | |      | ||   |  ||| |||||    |   |||  | ||  | | | |  |        
TGTTGGACCTGAGTGGAATTCTTACTGTCTTCTTCTGTGGAATAGTAATGTCACATTACACTTGGCATAATGTGACAGAAAGTTCTAGGGTTACCACCAAgta------tgtcttttctggattcagtttttctagcaaaaattatggttctta--cttcttacattatgtatactaattgctgattttctctttccatgttgcag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 10
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaat-tatagtcatatattaatatcctttgtcttaacac------
| | |||  ||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||||| || ||  |||| || |||| |||        | |||||| ||| |  || ||||      ||| |  | ||  |   |||  || | |||    |  ||   ||||  ||  ||  ||| |      
TGTCCTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAgta--------tgtcttctaaatag--atttcct------caa-gatatacgcacactgtccaagtctatgcatacctaaacatatttttcatcc-aactcttgcag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 9
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaacc--atctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaat-tatagtc--atatattaatatcctttgtcttaacac
| |  ||  ||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||| ||||| |||||  ||||||| |||| ||| |    |    |  |  | || |  | |    | |   || ||           || ||   | | | || |   || |||||| |    ||||   |    
TATGGTATCTGAGTGGCATTCTTACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcctctagacattcttcaagctaagttatatatggatctatttgggttgggggtagtaacactgtctaatttgatttattaaaacttgttgttacag---

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 9
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaac-----aaccatctcttctgaatcggaatgtcctgtcattcaa--tggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac
| |  ||  ||||||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||| ||||| |||||  ||||||| |||| ||| |      || ||  | |  | || |  |      | |   || |  |||   |   |   ||| ||| ||      ||||||||| |    |||   | ||| 
TATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATAACTACCAAgtatatcctctaaacaaatttcttcaagctaagctatatatggatctatttggggtagtaacactgtctaatttg-----atatattaa-actacttgctgttacag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 10
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac
| |  ||  ||||||| ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| || || || || ||  |||| || |||| |||        | |||||| ||  |  || ||||    ||   |  |    | ||||   |  |    ||  ||||| || |   |   | |   |    
TATGTTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGTATTGTTATGTCTCATTATACCTGGCATAACGTGACCGAGAGTTCAAGAATCACTACCAAgta--------tgtcttctaaacag--atttcctcaagttatgtacactgtccaagtctatgcatacctaaacatattttcac-ccaactcttgcag---

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv14s0128g00020.t01 (Vitis vinifera), 5'ss of exon 9
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcgga-atgtcctgtcattcaatgg-aacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac
|||| |   ||||||||||| | || || ||||| ||||||||||| ||||| || || || |||||||||||||| |||||||| |||||||| |||| || |         | ||  | || ||| |  |   ||  ||   |||  | || || |     | |||| |  ||||  |             |  | |   
TTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCAAgtgagtttatgatt-ttgagtataggatacatatagtacttgtgtggtgatacttatgaacagtgaattgttttcatccacagcctgtagaaatgattaag-

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv07s0104g01280.t01 (Vitis vinifera), 5'ss of exon 9
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaac-----------aaccatctcttctgaatcggaa------tgtcctgtcattcaatggaacacctaagttgtttaaattata---gtcatatattaatatcctttgtcttaacac
| ||||| || ||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||||||||| || |||||||| ||  || | ||||| | |||| |           ||  || |  ||  |||| | |      | || | | |||  ||      || ||     |||  ||  |    |  | | ||  | |   |  | ||  || 
TGTTCTATTTAAGTGGCATTCTCACTGTATTCTTTTGCGGGATTGTCATGTCACACTACACCTGGCATAACGTGACTGAAAGTTCAAGAGTCACCACAAAgtaagctaaatcttcagaaatattttctcaaaatctggaacccattttcttattattttattttttcccaaaaaaaattatgttgcatgtattttctgtttctgtttatgatttttgcag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctg--tcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac-------------------
| ||||| || ||||  ||||| ||||| |||||||| || ||||| ||||| ||||| || ||||||||||| |||||||| ||  || | || |||| |||    |  ||       |||  | | | |      |||||||     |  || |  |||   ||||  |  | | |   | || |   |  | |||                       
TGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAgtatgtta--attatccaggaagtgaagtattgaaattcattcatcttcattcc-attttgccaaaatgttgattaaactgtgatgttgctgatgttacagttcttaccaaatgtttgcag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 9
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcc-tttgtcttaacac---------------------
| ||||| |||||||| ||||| || || || || ||||| |||||||||||||| || || ||||| |||||||| || || ||  || | || |||| |||   |     ||      ||| ||||  |  | |  |        | |  |   ||    ||| ||  |||||   |   | |     ||| ||||                        
TATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATGTCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaata-ggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacag

upper sequence: PP1S207_23V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ05720 (Selaginella moellendorffii), 5'ss of exon 8
TTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCAGgtaaacaaccatctcttctgaatcggaatgtcctgtcattcaatggaacacctaagttgtttaaattatagtcatatattaatatcctttgtcttaacac
| |||||| |||||||||| || || |||||||||||||||||||| ||||| || ||||| ||||| || || || || |||||  |||| || |||| ||| |    ||  |||            | || | |  || ||   |   |   ||                                            
TGTTCTACCTGAGTGGGATCCTCACAGTCTTCTTTTGTGGCATTGTTATGTCACATTATACATGGCACAACGTCACGGAGAGCTCAAGAATCACAACCAAgtacagtgacaaatct-----------gtatcttatgttttaacttattcctgcag--------------------------------------------