1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acaaggcactggaacatgtccagtgttcttggtaatggaatttgtcaagcgtagactccagttgattgccaggtaactaacttttggtttgtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTGTAGCACGTTTGATTGGAGTTGCTGAACCAGACAAGCTCAAG
species | Physcomitrella patens |
transcript | PP1S207_10V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|208363990|gb|DC950366.1|DC950366
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|162262189|gb|FC437100.1|FC437100
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|208355316|gb|DC949824.1|DC949824
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|208361261|gb|DC957730.1|DC957730
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTT-GGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCNTGAGGCGATGAATACTTTTEST: gi|37845373|gb|BJ603381.1|BJ603381
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|162265319|gb|FC440437.1|FC440437
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTEST: gi|162178752|gb|FC354502.1|FC354502
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
EST: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAG GAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
genomic: AAAACGAACTTTTGGAGTACTTGAAATCACTACAGCCTCAGAACCTGCAGgtgacgagcc ... gtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTT
caagcgtagactccagttgattgccaggtaactaacttttggtttgtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTGTAGCACGTTTGATTGGAGTTGCTGAACCAGACAAGCTCAAG
aactaac putative branch site (score: 9)
taactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaggcactggaacatgtccagtgttcttggtaatggaatttgtcaagcgtagactccagttgattgccaggtaactaacttttggtttgtacgttcagGAGTTGACATCTAGTGCCGGCGAAGATGCTCTTGAGGCGATGAATACTTTTGTAGCACGTTTGATTGGAGTTGCTGAACCAGACAAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA