Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccatctcacctctctccctcttccctcactccctctcgtctctgctatccacttccctccttttctctcctcttcgcttcctctgctgccgactctctcttgggttctttgatctcttccttctgttttattgttttccccccttagGTTGTGACCACTCTTCCCTTGCGTTGATCGCCTCGCGGATCATACTGCGTGCCGCGTATTGGGTCTCCGACTTCCCGCGCATCTTCTTATTTAATCTCGC

Basic information

species Physcomitrella patens
transcript PP1S207_106V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18368142|gb|BJ200227.1|BJ200227
EST:     CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAG                         GTTGTGACCACTCTTCCCTTGCGTTGATCGCCTCGCGGATCATACTGCGTG
genomic: CTGCTGCCGCTGCCCTTCCCCATTGATCGCCTCGCCTCGCCACGCCTCAGgtacccatct ... ccccccttagGTTGTGACCACTCTTCCCTTGCGTTGATCGCCTCGCGGATCATACTGCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctcttgggttctttgatctcttccttctgttttattgttttccccccttagGTTGTGACCACTCTTCCCTTGCGTTGATCGCCTCGCGGATCATACTGCGTGCCGCGTATTGGGTCTCCGACTTCCCGCGCATCTTCTTATTTAATCTCGC
              ctttgat  putative branch site (score: 5)
            ttctttgatctcttcc  CT-rich tract
                               tgttttattgtttt  TA-rich tract