1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aactcggtggttgtgtgtgtcctttaattgtgttcatagatctgatggatcgataggtttctaaaatcatctcgactaacaatgtgtacttgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGCTCAAAGTTTGGTGTTGTGAAGCATATCTTTGTTGACAA
species | Physcomitrella patens |
transcript | PP1S207_105V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAG TCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGCEST: gi|37852126|gb|BJ610134.1|BJ610134
genomic: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAGgttagtccta ... tgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGC
EST: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAG TCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGCEST: gi|162175987|gb|FC352393.1|FC352393
genomic: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAGgttagtccta ... tgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGC
EST: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAG TCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGC
genomic: AGCCGAGTGAATATCTGCTGCTCAAGAATATGTTTGACCCGAGCACCGAGgttagtccta ... tgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGC
tggatcgataggtttctaaaatcatctcgactaacaatgtgtacttgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGCTCAAAGTTTGGTGTTGTGAAGCATATCTTTGTTGACAA
gactaac putative branch site (score: 1)
tttctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactcggtggttgtgtgtgtcctttaattgtgttcatagatctgatggatcgataggtttctaaaatcatctcgactaacaatgtgtacttgtcatgcagTCCGACCCGGATTTTGACATGGATATCAAGGATGACGTACAAGAGGAGTGCTCAAAGTTTGGTGTTGTGAAGCATATCTTTGTTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC