1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCTTCGTATAGGGGCTGGAGGTCTGGGTAGTGGAGGCCGTGGTAAAAGCCCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAGgtatctccagtcttcttacttgtatgacaaatagatcagaaggaacagaaggtcatttgctgttcctatgttctagttttgcttcctttctttttacttcttttcttttcctctttattttcgttgaatctgaatctgacggtgaacaatggttccacatcctcttctag
species | Physcomitrella patens |
transcript | PP1S207_102V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAG CCTCTTCTAGCCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCEST: gi|208390575|gb|DC937507.1|DC937507
genomic: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAGgtatctccag ... cctcttctagCC-C----A-C----GGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCC
EST: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAG CCTCTTCTAGCCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCEST: gi|162239568|gb|FC416850.1|FC416850
genomic: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAGgtatctccag ... cctcttctagCC-C----A-C----GGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCC
EST: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAG CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAG
genomic: CCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAGgtatctccag ... cctcttctagCCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCGTATAGGGGCTGGAGGTCTGGGTAGTGGAGGCCGTGGTAAAAGCCCTCGCGCCAGTCCAAGATATCGTCGCAGCCCAAGCTATGGTGGCCGAAGgtatctccagtcttcttacttgtatgacaaatagatcagaaggaacagaaggtcatttgctgttcctatgttctagttttgcttcctttctttttacttcttttcttttcctctttattttcgttgaatctgaatctgacggtgaacaatggttccacatcctcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG