1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtcgatccattggttgcttattaaggtcgctctggcatattttgacatgtaaatgcacagaataccgttggactgactaccttcctttattgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGATTGGGAAGAAGGCGACGGGGGATACTTAGCACCTGAGCTACTTCAAGA
species | Physcomitrella patens |
transcript | PP1S207_100V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGEST: gi|162211646|gb|FC387934.1|FC387934
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGEST: gi|37824912|gb|BJ582978.1|BJ582978
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGEST: gi|18341162|gb|BJ173195.1|BJ173195
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGEST: gi|162211645|gb|FC387933.1|FC387933
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGEST: gi|37848122|gb|BJ606130.1|BJ606130
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
EST: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAG GAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
genomic: AGTACTTCATCTTGATATCAAGCCAGAGAATATTTTCATAGATGGCCAAGgtaaaaactg ... ttgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGG
acatgtaaatgcacagaataccgttggactgactaccttcctttattgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGATTGGGAAGAAGGCGACGGGGGATACTTAGCACCTGAGCTACTTCAAGA
gactgac putative branch site (score: 7)
ccttcctttattgctt putative PPT
tttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcgatccattggttgcttattaaggtcgctctggcatattttgacatgtaaatgcacagaataccgttggactgactaccttcctttattgcttgtagGAAACTTGAAATTAGGCGATTTTGGCTTAGCAGTACCATGCAATATGTGGGATTGGGAAGAAGGCGACGGGGGATACTTAGCACCTGAGCTACTTCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaca