1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgctgacaaccattttcctagggttttctcttttttcaatggtctatattgtacttgaagaatgaccgtttggtttgcttttgcgtttgtcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCGTCTCTGAGCGCAATTGCAGCGGCAGGAAGATTGGGAGAGAGCAGCACAG
species | Physcomitrella patens |
transcript | PP1S206_83V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTT GCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCGEST: gi|162260341|gb|FC436788.1|FC436788
genomic: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTTgtatgtgttc ... tcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCG
EST: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTT GCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCGEST: gi|18356741|gb|BJ188800.1|BJ188800
genomic: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTTgtatgtgttc ... tcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCG
EST: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTT GCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCG
genomic: GCAGTCGATGCTGGCTCTCGACCACCCTCAACGTGCTTCATGTCCGCCTTgtatgtgttc ... tcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCG
tatattgtacttgaagaatgaccgtttggtttgcttttgcgtttgtcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCGTCTCTGAGCGCAATTGCAGCGGCAGGAAGATTGGGAGAGAGCAGCACAG
atctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgacaaccattttcctagggttttctcttttttcaatggtctatattgtacttgaagaatgaccgtttggtttgcttttgcgtttgtcatctaaagGCCAGCACTTTAGTAGTGGCGGAGCATGATGGTGGCAAATTGAAAGACTCGTCTCTGAGCGCAATTGCAGCGGCAGGAAGATTGGGAGAGAGCAGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG