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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagcatgattagaaaccggtatgagccgattcccttgcaattgtgcatgctgcccagaatttttcactgcaatcatcgctttttgactttaaaatgcagGTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGAATATCTGGGGCAATCCAACATTTAGCAGGCATGAAGGACTCCAAAGTCA

Basic information

species Physcomitrella patens
transcript PP1S206_83V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162260533|gb|FC435107.1|FC435107
EST:     GGGCTTCAAGAGCAGCAGTGGATGGAGGATACGTGCCTAATGACATGCAG                         GTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGA
genomic: GGGCTTCAAGAGCAGCAGTGGATGGAGGATACGTGCCTAATGACATGCAGgtgatcgctt ... taaaatgcagGTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGA
EST: gi|162260532|gb|FC435106.1|FC435106
EST:     GGGCTTCAAGAGCAGCAGTGGATGGAGGATACGTGCCTAATGACATGCAG                         GTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGA
genomic: GGGCTTCAAGAGCAGCAGTGGATGGAGGATACGTGCCTAATGACATGCAGgtgatcgctt ... taaaatgcagGTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgctgcccagaatttttcactgcaatcatcgctttttgactttaaaatgcagGTTGGTCAAACTGGAAAAATAGTCGCACCAGAGTTGTATATTGCGATAGGAATATCTGGGGCAATCCAACATTTAGCAGGCATGAAGGACTCCAAAGTCA
                                    ttttgac  putative branch site (score: 3)
                                   tttttgactttaaaat  TA-rich tract