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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaatttatctaccagaatcattgcctgccacgctagagaaggttatgaactatcgtcagctctgttttgattgcgaatcgacgtgtggttctcttcagATCTCTATAATGTGTGGTGGTTCATACCGGCGGGGGAAAGCTTTGTCGGGTGATATGGATTTTGTTATAACGCATCCGGATGGCCACAG

Basic information

species Physcomitrella patens
transcript PP1S206_54V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177602|gb|FC353188.1|FC353188
EST:     AGGAGATGGAGGCAATTGTGCAGAAGTCTGGATCAGAGCTTTGCCCAGGG                         ATCTCTATAATGTGTGGTGGTTCATACCGGCGGGGG
genomic: AGGAGATGGAGGCAATTGTGCAGAAGTCTGGATCAGAGCTTTGCCCAGGGgtgagttttg ... ttctcttcagATCTCTATAATGTGTGGTGGTTCATACCGGCGGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaactatcgtcagctctgttttgattgcgaatcgacgtgtggttctcttcagATCTCTATAATGTGTGGTGGTTCATACCGGCGGGGGAAAGCTTTGTCGGGTGATATGGATTTTGTTATAACGCATCCGGATGGCCACAG
                     ttttgat  putative branch site (score: 4)
                                             ttctcttc  putative PPT
                     ttttgatt  TA-rich tract