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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccttcttccaaggagatggttgattttcacttgaaaacagtagtgttcttcttagctaatcagttatttagattctctaattgtgtgttatgcctcagATGGAAGCGTATCCTAAGGCAACTGCTGTCCTCGTGAGGAACCACGGCATATATATCTGGGGTGATTCTTGGATCAGCGCGAAAACCCAG

Basic information

species Physcomitrella patens
transcript PP1S1_661V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_661V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G574782_T01 (Zea mays), 3'ss of exon 4
atccttcttccaaggagatggt-tgattttcacttgaaaacagtagtgttcttcttagctaatcagttatttagat-tctctaattgtgtgttatgcctcagATGGAAGCGTATCCTAAGGCAACTGCTGTCCTCGTGAGGAACCACGGCATATATATCTGGGGTGATTCTTGGATCAGCGCGAAAACCCAG
    ||  || |  |  |   |   ||| |    |    | |  || |||    | |     | || | | |  |   || | ||   |  ||||   |||||| | ||| || || |||||||||||||| || || ||||||||||| |||||| | ||||| || ||||||||||  || || || |||
--ggtttatctatagttacaatactattcttgaatcttgataacagagtttccatgaatattttagatgtatgtaggcctttgatacagaattatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATATATGTATGGGGGGAGTCTTGGATCAATGCCAAGACACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttcttagctaatcagttatttagattctctaattgtgtgttatgcctcagATGGAAGCGTATCCTAAGGCAACTGCTGTCCTCGTGAGGAACCACGGCATATATATCTGGGGTGATTCTTGGATCAGCGCGAAAACCCAG
                               ctctaat  putative branch site (score: 3)
             taatcagttattta  TA-rich tract