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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAGTTCATGGTGGACATGAAATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgcacggctttgctccttttggaatgggcttgcttttgaatcaagtatttgaggctttccattcatttcgagcacatttacgtgaggttacgtt...

Basic information

species Physcomitrella patens
transcript PP1S19_254V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S19_254V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G175728_T01 (Zea mays), 5'ss of exon 3
ACAGAGTTCATGGTGGACATGAAATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgcacggctttgctccttttggaatgggcttgcttttgaatcaagtatttgaggctttccattcatttcgagcacattta---cgtga-ggttacgtt---------
|| || ||||||||||||||||||||||| ||||| || |   | |||   |  ||| |  || | ||||  ||||    |       ||  |   |||   || | |||   |   | || |     |    |||||  ||     |       |||      ||| || ||| ||         
ACGGAATTCATGGTGGACATGAAATGTGAGGGATGTGTAACAGCTGTGAAAAACAAGCTGCAAACTCTTGAAGgtatggggtt--atattatttaattttctatcgactttaatgaaactctaaagcatagtactttctgtttcaaccatttgtgtttggtttatgatggctaccttttactacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824407|gb|BJ582473.1|BJ582473
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTNGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
EST: gi|18325651|gb|BJ157648.1|BJ157648
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
EST: gi|100440610|gb|BY962297.1|BY962297
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAAC-AAATAGTGAGAGTT
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTT
EST: gi|100405311|gb|BY955462.1|BY955462
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
EST: gi|100410559|gb|BY992161.1|BY992161
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
EST: gi|162279579|gb|FC455344.1|FC455344
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
EST: gi|162192045|gb|FC367258.1|FC367258
EST:     ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTG                         GTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG
genomic: ATGTGACGGATGCGTCAAGTCAGTGCGCACTAAGTTAGAACCCCTTGCTGgtaaaatgca ... ttggatgcagGTGTGAAGTCCGTGGACATCAATCTTGAAAACCAAATAGTGAGAGTTTTGG