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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTGTGAGCATGCGTATACTCTAGTGCAGAACTTGGATCCATATAGTGAAGGCAGAGGTGTATTGCAGTTCAAGACGGGTTTGCTGTCCGTCATCAAGgtatttctaagcacagtctataagctggagctcatttagaatacgaacttctttagcgcatcctgttcaatcctgctgcatgaccaatgtattgcatgattgatgtgtaatggaggagcatgactgttgcag

Basic information

species Physcomitrella patens
transcript PP1S18_300V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S18_300V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 2
AGTGTGTGAGCATGCGTATACTCTAGTGCAGAACTTGGATCCATATAGTGAAGGCAGAGGTGTATTGCAGTTCAAGACGGGTTTGCTGTCCGTCATCAAGgtatttctaagcacagtctataagctggagctcatttagaatacgaact-tctttagcgcatcctgttcaatcctgctgcatgaccaatgtattgcatgattgatgtgtaatggaggagcatgactgttgcag
  | ||||||||||| ||| |  ||   || || ||||| ||  | ||||||||| ||||||| ||||| |||||||| |||||| |||| |||||||||||||   |    | ||||||           | || ||  |||  || | |  |  |   ||     |    | | |||  |  |    ||||    | |||  | ||| |                      
--TATGTGAGCATGCATATTCATTATCTCAAAATTTGGACCCCAACAGTGAAGGCCGAGGTGTTTTGCAATTCAAGACTGGTTTGATGTCTGTCATCAAGgtataaatt--tagagtctact--------tttatgtaagataaaaattgtgctcgggatatttgacttgtgcatactg-gtatcagtggtatgtttttatttgtttgtga----------------------

upper sequence: PP1S18_300V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 2
AGTGTGTGAGCATGCGTATACTCTAGTGCAGAACTTGGATCCATATAGTGAAGGCAGAGGTGTATTGCAGTTCAAGACGGGTTTGCTGTCCGTCATCAAGgtatttctaagcacagtctataagctggagctcatttagaatacgaacttctttagcgcatcctgttcaatcctgctgcatgaccaatgtattgcatgattgatgtgtaatggaggagcatgactgttgcag
  | ||||||||||| ||| |  ||   || || ||||||||  | ||||||||| ||||||| || || |||||||| |||||| |||| ||||||||||||           | | |||   ||     | || || ||||  |  |      || ||   |  |  | | || ||||| |||  | | ||   |||||  | ||| |    |  |              
--TATGTGAGCATGCATATTCATTATCTCAAAATTTGGATCCTAACAGTGAAGGCCGAGGTGTTTTACAATTCAAGACTGGTTTGATGTCTGTCATCAAGgta---------gaaatttattgtctact-tttatgtaaaataaaagttgt----gctcaggatacttga-catg-tgcat-accggtatgttt--tgatttgtctgtgactttgtggt-------------

upper sequence: PP1S18_300V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGTGTGAGCATGCGTATACTCTAGTGCAGAACTTGGATCCATATAGTGAAGGCAGAGGTGTATTGCAGTTCAAGACGGGTTTGCTGTCCGTCATCAAGgtatttctaagcacagtctataagctggagctcatttagaatacgaacttctttagcgcatcctgttcaatcctgctgcatg-accaatgta--ttgcatgattgatgtgtaatggaggagcatgactgttgcag
  | ||||||||||  ||  | || |  || ||  | |||||  ||||||||||||||||||| || |||||||| || || ||| |||| || || ||||||||| |       || | | || |  || ||||  |   || |    |      | ||     || |||  || |   |   ||| || |   ||||||| |                               
--TATGTGAGCATGGTTACTCACTTGCACAAAATCTCGATCCTAATAGTGAAGGCAGAGGTGTTTTACAGTTCAAAACTGGATTGATGTCTGTTATTAAGgtatttttctcttatgtatgttagatacag-tcatcca---tatgtttgttaccgac-cacttcattgaata-tgttatttatgccattggaagctgcatgaatcc-----------------------------

upper sequence: PP1S18_300V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 3
AGTGTGTGAGCATGCGTATACTCTAGTGCAGAACTTGGATCCATATAGTGAAGGCAGAGGTGTATTGCAGTTCAAGACGGGTTTGCTGTCCGTCATCAAGgtatttctaagcacagtctataagctggagctcatttagaatacgaacttctttagcgcatcctgttcaatcctgctgcatgaccaatgtattgcatgattgatgtgtaatggaggagcatgactgttgcag
  | ||||||||||| ||| |  |    || ||  |||||||  ||||||| || ||||||||||| ||||||||||| |||||  |||| || ||||||||||| |   |||  |   | | | || |  |  |||    |  | |    || |   || | || ||     |  | ||     ||   || ||||   | |||||                         
--TATGTGAGCATGCTTATTCATTGTCTCAAAATCTGGATCCTAATAGTGAGGGAAGAGGTGTATTACAGTTCAAGACTGGTTTAATGTCTGTAATCAAGgtattccct-gcattgatgaaatggtgaattttgttt----tttgcatcctttaaaaaca-catggtctgcattatttcaca--taaaagatggcatttattatgtgc------------------------