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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc...

Basic information

species Physcomitrella patens
transcript PP1S183_17V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os12g37360.1 (Oryza sativa), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagg-gctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttg--ggactgtgctgggctttcttgtttattgttaaatttc--
||| ||  |  | ||| | ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||| | || |||||||||||||| |||||  |   |   ||||  | ||     | |||  |  ||   ||  | || |||     |||||   |    |     ||  | | | ||   |||  |||    
GCTGGCGTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTCCTCCACATGCTCAAGGACGAGgttcgccacgaagtttctttcctt---ttgttttaattgagcagtcgatt-catctgttggttgttaggtgatctgatgcggtttcgattgg-gttggattatgc

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os01g15010.1 (Oryza sativa), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
||| ||| |  | ||| | ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||  | || |||||||||||||| |||||  |     ||   |   | |  ||| | | |||||    | | | |||  ||   || |  |   |||| |||| |||   ||  |            
GCTGGCCTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtagg----tcgcccggatcgatcgatcgatcgagatttgta-ctgatttggtt---ggttctgatttgtgttgggatttgg-gtgcag-----------

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os01g23620.1 (Oryza sativa), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgag----------------ggctccgtttgctcccaaggatagttagagatggagagcgggtt-tcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc----------------
||| ||  |  | ||| | ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||  | || |||||||||||||| |||||                   || ||  | | | | |    | |     ||||      ||     |    |    |||||  |||  | |    |  ||||   |   |   |                   
GCTCGCGTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtaccctcctacccttcgcccggatctctctcccctcccccacaaccccagatctgacccgatccatttccctttcgttggatctgatccgtctgtgtttgtgcgtgcgtgcgtgcgtgggcggatggtgcag

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os06g12090.1 (Oryza sativa), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctcc-gtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
||| ||  |  | ||| | ||||||||||||||||| ||| | ||||||||| | |||||||||||||| |||||  |  |  ||||||||    | |||||   ||||||  |  | |  |      |     |||    |      ||| | |           | | ||       || |    |||| | ||  |  
GCTGGCGTCGATCGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAAACCACCCTCTTCTACATGCTCTCACAAGAGgtataggctcccatcggatggcctaatcaaccgaagaaaatgccaaattttaaatttttaaacttaattttgagattgattttaagatattttcaacgta-

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G181536_T01 (Zea mays), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtg--------agggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgc----tgggctttcttgtttattgttaaatttc-------
  |  ||       || | ||||||||||||||||| ||| | ||||||||| | ||||||||||||||||||||| |||| |||||||||||||| |||||          | || | | ||   |        |  |  || ||  ||     | ||     | ||  ||||  |||      || |   ||  | | | ||     | |       
TGTCTCCCTGCGGCGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgtacacattctggcgccctggttttgcttgctaccacatgcagttgatgatttcttctcgcgtgccggccgggatagtgaacaacggtcgccctgctgtgtcgtcgttgtgctatgcag

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctt-tcttgtttattgttaaatttc
||| ||| || | ||  | ||||||||||||||||| ||| | ||||| ||| | ||||||||||||||||||||| |||| |||||||||||||| ||||| | | | ||||   | |||           |      |     | | |  ||| | ||    | |||  | | |||| | | | |  |||         
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgt-acgccaccgt---cccccgtctgcttccggtatcctatcctagatctgcttccctgggcttgcctgatccgtgcttgtttcgatcgttgcag------

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtg------agggctccgtttgctccc--aaggatagttagagatgga---gagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc---------
||| ||| || | ||  | |||||||||||||| || ||| | ||||||||| | ||||||||||||||||||||| |||| |||||||||||||| |||||        |  | |||  |||| ||   |   ||| |      | |   ||  || |    | ||    |  ||  |  | | | ||||||  |   || ||   |            
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatt--tctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgttta--ttgttaaatttc-------
||| ||  |  | ||| | |||||||||||||| || ||| | ||||| ||| | ||||||||||||||||||||  | || |||||||| ||||| |||||     || | |  |    |        ||      | |   | | | | ||   |   ||  ||||   | ||| || ||  | |   | | |    |||       
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccag-tcttatatgc---tttcgacttaacggggattcctgatctggttcgattgggttcatcgcag

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA03G39110.2 (Glycine max), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagtt--------agagatggagagcgggtttcattcacgggttgg--gactgtgctgggctt--tcttgtttattgttaaatttc
 || ||  |  | ||  | ||||||||||||||||| ||||| ||| | ||| | || ||||| ||||| ||||| ||||| ||||||||||| ||||||||      ||  |||  |  |     |  ||        |    |  |     | |||   |   || || |   |  ||| |||   |   ||| |||             
TCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGgttcctcttcaatttcttttcccttttttttgtttccccaattgtttaatattgttttttcttttggattcgttaatagtggtggatctgcccttatttg------------

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
 || ||  |  | ||| | ||||||||||||||||| ||||| ||| | ||| | || ||||| ||||| || || ||||| ||||||||||| ||||||||   |  | | |||  |      | |  |     || |    |   |||  || |    ||   |      | || |||   |                
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtt--tccccaatcgtttaccttttttttttatta-ttattataagagttggttttgcag----------------

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA09G04300.1 (Glycine max), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgttt--gctcccaaggatagttagagatggagagcgggt---ttcattcacgggttgggact-gtgctgggctttcttgtttattgttaaatttc
 || |   || | ||  | |  || |||||||| || ||||||||||| || || || ||| | ||||||||||| |||||  |||||||||| ||||||||      |  ||||   ||  |||   |  |    | |  | |     |   || |   ||   || |   |   | |    ||||| |||| | ||| ||||| 
TCTGGAATCCCTGGGTCTGTCACAAAAGGAGGCTAAGATCTTGTTCCTTGGTTTAGATAACTCTGGCAAGACCACTTTGCTTTACATGCTCAAAGATGAGgtc----ttttgtttcaactttcaattttgttctctgcttcaaaattaatgggttaaaatacattttcgttttcacgttttattttctagttt-tagtttaattt-

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA10G28910.1 (Glycine max), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggct--ccgtttgctcccaaggatagttagagatggagagcgggtttcattcacg-ggttgggactgtgctgggctttcttgtttattgttaaatttc
 || ||  |  | ||||| ||||||||||||||||| ||||| ||| | ||  | || || ||||| |||||||| ||||| ||||||||||| || |||||      |  ||| ||   |||  | || | |  | ||  |  | |  | | ||||     ||| | |   |  ||  |  | ||   |||| |||      
TCTGGCATCGCTTGGGTTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgtttcccttttccgcttaagccct-gaatcgctttaaatttactgggaatgttattcttttagttagaatccttttgtacaat-ttaaatattattacgaga-

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA20G38360.1 (Glycine max), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc--------
 || ||  |  | || || ||||||||||||||||| ||||| ||| | ||  | || || ||||| |||||||| ||||| ||||||||||| || |||||      | |   | ||     |  || ||         |  |    ||||   |||  |  |  |||    |    ||    |||| ||  ||  ||         
TCTGGCATCGCTTGGATTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGTCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGgtttccctttcccatccttttccgcttattt-----ctctgctccttcttcacaaacgcttaagccctgaatcga---tttaaatttactgggaatcttattcgttta

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv14s0060g01340.t01 (Vitis vinifera), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgt-------gagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
 || ||  |  | || |||||||||||||||||||| |||||||| || ||  |||| || ||||| ||||| || ||||| || ||| | || ||||||||        | |  |    ||| |  ||       ||  || |||       ||||  ||   |||    ||  |     ||     |   ||| |||| |     
TCTAGCATCGCTTGGTTTATGGCAGAAGGAGGCCAAGATCTTGTTTCTAGGGCTGGATAATGCCGGAAAGACGACTTTGCTTCATATGTTGAAAGATGAGgttcgttgcaatgcattttgttgatttcattatgttttctagttggcttctctgtttggtttctgggagaagataggaaaaggaaaggta--ttactgttta-----

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
  | || | | ||||| | ||||||||||||| ||| ||||||||||| ||  | ||||||||||||||||| ||| |||| |||||||||||||| ||||| || |      |||       | ||         | |     || | |       || ||| | ||| || |                          
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttg-------gaatttcctcctctaggtcatggatct-----ggggattgcgcctgcgcag--------------------------

upper sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 1
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc
  | || | | ||||| | ||||||||||||| ||| ||||||||||| ||  | ||||||||||||||||| ||| |||| |||||||||||||| ||||| || |      |||       | ||         | |     || | |       || ||| | ||| || |                          
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaagcgaatttcttg-------gaatttcctcccctaggtcatggatct-----ggggattgcgcctgcgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208357811|gb|DC918601.1|DC918601
EST:     CCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: CCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208358568|gb|DC946529.1|DC946529
EST:     TGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: TGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208394477|gb|DC928529.1|DC928529
EST:     GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208385987|gb|DC956503.1|DC956503
EST:     GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208373866|gb|DC956340.1|DC956340
EST:     GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208374067|gb|DC948936.1|DC948936
EST:     ACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: ACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208365927|gb|DC955474.1|DC955474
EST:     GCTTGGACNACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208363987|gb|DC950363.1|DC950363
EST:     TGGACAACGCCGGCAAGACCACGNTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCCACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: TGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208400016|gb|DC925242.1|DC925242
EST:     GC-TGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: GCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
EST: gi|208395315|gb|DC924425.1|DC924425
EST:     TGGACNACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAG                         AGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT
genomic: TGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 19

GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctc ... ggtgacacagAGGTTGGCCCAACATCAACCGACGCAATATCCTACTTCGGAGGAGTTGAGTATCGGAAAAATCAAGTTCAAAGCATTTGATCTGGGTGGTCACCAGATCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG