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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGCAAAGCCAGTGAGAACTGCGTCAGGAATTGCGGTGTTAGCTGTGATATCGAAGCCGCACCGATGCCCTCACATTGCAACGACGGGAAATATTTTTgtttagtgccctggaggatcggattctgattttgag

Basic information

species Physcomitrella patens
transcript PP1S167_46V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S167_46V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 1
---GCGAGCAAAGCCAGTGAGAACTGCGTCAGGAATTGCGGTGT------TAGCTGTGATATCGAAGC---CGCACCGATGCCCTCACATTGCAACGACGGGAAATATTTTTgtttag---------tgccctggaggatcggattctgattttgag--------------------------------------------
   | |   |  |||   ||| ||    |   || ||   ||         ||  ||    | ||  |   | ||||      | | |  | |   |   || |   ||||| |||||         |    ||  | || |   |||| ||    |                                            
TTTGTGTTTATTGCCCTGGAGGACCTGATTCTGATTTTGAGTACAGTACACAGTCGTACACTGGATACGAGCCCACCAGCATGCGCGCGATTCG-TGCTAGgtagggtttttctttaggttttaattttatttgttgtattgatctctgtttggatgatgggaaatcataggaaaaggaactaagtcttttcattaatgaa