1 5' 3' | 2 5' 3' | 3 5' 3' |
...gattttagcgtcacaatggttatgcgataattagtagatgtggtctgaattgtacaatgtcaaatgatctaataatcacgagtcttgcttgaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGCTCTGCTTGAAACTGGCGCAAGAGCTTGGAGTGATCATTGCAAATCCAT
species | Physcomitrella patens |
transcript | PP1S163_57V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|67572331|gb|BJ945155.1|BJ945155
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: AGTCCGCC-GCAAGTTGGGGTCGTACCTTGTGATGACCCACNTTNNG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|100407557|gb|BY991753.1|BY991753
genomic: AGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|162203236|gb|FC379333.1|FC379333
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|162234090|gb|FC410330.1|FC410330
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|162253340|gb|FC429766.1|FC429766
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGEST: gi|162261264|gb|FC437281.1|FC437281
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
EST: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAG GCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
genomic: ACAAGTCCGCCAGCAAGTTGGGGTCGTACCTTGTGATGACCCAATTTCAGgtgaagttgg ... gaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTG
tgaattgtacaatgtcaaatgatctaataatcacgagtcttgcttgaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGCTCTGCTTGAAACTGGCGCAAGAGCTTGGAGTGATCATTGCAAATCCAT
atctaat putative branch site (score: 7)
aaatgatctaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttagcgtcacaatggttatgcgataattagtagatgtggtctgaattgtacaatgtcaaatgatctaataatcacgagtcttgcttgaattaccagGCTGCTGGAAACTCGAGTGCTCTGTTTCTGACCGCTGCTGCTCAGAACCTGCTCTGCTTGAAACTGGCGCAAGAGCTTGGAGTGATCATTGCAAATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG