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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag

Basic information

species Physcomitrella patens
transcript PP1S13_132V6.1
intron # 39
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
lower sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 6
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
||||||| || ||| | ||  ||||||| || ||||||||||||||||||||||||  |    |    |  ||  |        ||  | |      | ||  | |||   ||||   |  |   ||  || | ||| |   | || |      |        || ||   
GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattttcttcattcgtgttttgaattttctgcg------ctaacatctagc--ttatcagtcaa---gaataccttaatctctgaatggtaggccag----aaaaatctt---

upper sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 42
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
| |||||||| || ||||| | ||| |||||||| ||||||||||||||||||||   ||   ||  |  | |      | |||| |    |  |||||  | | || || |||  |||  |                                                 
GATTCAATTCAACCTTACGTCAAGGAAATATTACACATCATGAATATATTCAGgtgagacttgttgtttaatg------atgcctcta-caacaaatcct-tttctaata-ttaaatttacag------------------------------------------------

upper sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 40
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
| |||||||| || ||||| | ||| |||||||| ||||||||||||||||||||   ||   ||  |  |   |||      | |     |  ||||   | | || || |||  |||  |                                                 
GATTCAATTCAACCTTACGTCAAGGAAATATTACACATCATGAATATATTCAGgtgagacttgtt-gtttattgatc------cctctacaacaaatc-gttttctaata-ttaaatttacag------------------------------------------------

upper sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 39
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatcca---atctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
| |||||  | ||| |||| | ||||||| ||||||||||||| ||||||||||||   || | |  |  || | |   ||   |    | || ||   |   || || | || || |||||  |                                                 
GTTTCAACACAACTCTACGTCAAGGGAATGTTACTCATCATGAGTATATTCAGgtc---cgtactttttaactcttt--acaattaaaataataaaaatatatatatgcattaattctgtttacag------------------------------------------------

upper sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 37
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
| |||||||| || || || | ||||||| |||||||||||||||||||||||||   ||   |   |       |   |    |   |  |  ||   ||||| || |   || ||||  |                                                 
GATTCAATTCAACATTGCGCCAAGGGAATGTTACTCATCATGAATATATTCAGgtaagaccactatttgtctatttgatataattacaggaaaaaaaaaaatctctaat--ctaagtttacag------------------------------------------------