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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG

Basic information

species Physcomitrella patens
transcript PP1S131_16V6.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os01g56580.1 (Oryza sativa), 3'ss of exon 13
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                        | |   |  |  |  |  | |||    |  ||  |  | ||   | | |          | || | |  ||  |||| ||||| ||||| || ||||| || |||| ||| ||||||||||| || |||||||  || ||||| |||||||| |||||||| ||||
----------------------------------------gtactcttactcttgagcaaagatt--ccctcttttctctggagcgttctgagttgcctattcttgtacttttagGATTGGATTATGGAGCAATGGGAGAATAATTACTACATCAGTGCCATAGCGGGTGCAACAAATGGAAGTTCCTTGGTGGTCATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G116086_T01 (Zea mays), 3'ss of exon 13
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                    |   || | |  |   ||    ||    |  |  ||     | |  ||||    | | |    | |    ||    |||      | |||   |||| ||||| ||||| ||||||||||| || | ||| ||||||||||| ||||||||||  || || || |||||||| |||||||| ||||
-------------------gtatggtctcgattctcatgcatagtgctttttctaa-----gcaaggctacatttataagctacaagtgtcttttcttg-----cacttt---agGATTGGATTATGGAGCAGTGGGAAAATAACTACTACATCAGTGCCATAGCTGGTGCAATGAATGGGAGTTCCTTGGTGGTCATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G045259_T02 (Zea mays), 3'ss of exon 12
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                |  || |  || |   |  |  |||  |  |     ||| |   | |   |   |   || | |     |     |   | |   |  || | |   |||| ||||| |||||||||||||| |  ||||||||||||| |||  | |||||||| ||||| |||||||| |||||  | ||||| | ||
---------caacactttactga--ttatatatcatcaatgatgtctcattgtcatttgcatagtggtgttttatgctgt----tacagtttttaacttgcttgtactgtgttagGAATGGATAATGGAACAGTGGGAGAGAAATTTCTATATCACTGCACTGGCTGGTGCGAATAATGGAAGCTCTTTGGTGATTATGTCAAGAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G158177_T01 (Zea mays), 3'ss of exon 5
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
            | |   | ||    ||||  ||  ||     ||      |||| ||||   ||| |   | |  | |||   |||   |          |  || | |   |||| ||||| |||||||||||||| |  ||||||||||||| |||  | ||||| || ||||| |||||||| |||||  | ||||| | ||
--------aaaatttactgttc----tttgtttatgattgtacgccaacacttcactgattatacatc---ctcaatgatgtctcattgtcatttgcatgcttgtactgtgttagGAATGGATAATGGAACAGTGGGAGAGAAATTTCTATATCACTGCACTGGCTGGGGCGAATAATGGAAGCTCTTTGGTGATTATGTCAAGAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G017835_T01 (Zea mays), 3'ss of exon 11
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                               |||| |  | |   |   |     ||| |    ||        || | | | | ||      | |   |   | |     ||||||||||||||||||||| ||||| || | |||||| |||||| |  | |||||  | || || ||||| ||  | || || ||||| ||||
-------------------------------gtaggaccttcccatctgcacctcatgtt----cattctcttttgatgttctcaattttgcaaaaaacaaaaacaaaaacacagGAGTGGATCATGGAACAATGGGATAAAAGTTTCTACATCAGTTCTGTTGCTGGCTCCAACAATGGAAGTTCTATTGTAGTGATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA18G53810.1 (Glycine max), 3'ss of exon 12
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgca-----gcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG-
                    | || || |  |   |||||  |      |||||| |  ||| |   | | | | | | | | |||   | |||||  |  |       | | ||| ||||| |||||||||||||||||||||||||| |  || || | | | || || || || ||||| || |||||  | || || ||||| |||| 
--------------------tgaaattatatgatttatataaatcagtacttgtcatataattagctatctgtt-ttcatatgatgaatcttgccc--atgtgattctgtttcttttcaggAATGGATCATGGAACAGTGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA07G01890.1 (Glycine max), 3'ss of exon 12
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
     | |   || |   ||| |  |  | | |||| | |  | || ||   |  || ||   |  || || | | ||| | |   |    |    |||  | |      |  |||| ||||||||||| || |||||||| |||| |||||||||||| || ||||| ||    ||||| |||||  | || || |||||||| |
-----tctcatgttttctgcttacatgattg-tagtctgtagatct-gttaatatataatctcaaggc-atgcttattaagggattt---ttggttttggtttac----ctgaagGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGCTCGCTAGTAGTAATGTCTAAGG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA04G09080.1 (Glycine max), 3'ss of exon 12
-------------------------------------gtgg-gtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtc-gttcaatgatagaacagctatccctgttatgcgccatgccctcaca---ttgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                     |||| ||  ||| | ||    |    | || || | |||   |   || || || |  |  |  |  |  | |   | | |     | |   || |||   |   ||     ||| | |||| ||||| |||||||||||||| |||||||  || || |||||||| ||||| |  ||||| |||  ||| ||||| || ||||||||||
gtttgctagtttatgttttagtggtggcattatgcatgtggtgttggtgatatcatattatcatctttggaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 12
-------------------------------------gtgg-gtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtc-gttcaatgatagaacagctatccctgttatgcgccatgccctcaca---ttgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                     |||| ||  ||| | ||    |    | || |  | |||   |   || || || |  |  |  |  |  | |   | | |     | |   || |||   |   ||     ||| | |||| ||||| |||||||||||||| |||||||  || || |||||||| || || || ||||| |||  ||| ||||| || ||||||||||
gttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 12
-----------------------gtgg----gtgtgtggtgtctcgctcaagttttgg-gtagtatatgcagc--ttgtcgttcaatg---atagaac--agctatccctgttatgcgcc--atgccctcacattgagtcatattttt-----acagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                       ||||     || |||   | | | | |  |  | |  |  | | || | |  || || ||  ||    |||| |     |||    |||| ||  |   |||   ||  |   | |||| ||| |     | |||| ||||| |||||||||||||| |||||||  || || |||||||| || || || ||||| |||  ||| ||||| || ||||||||||
gttggctagtttatgttttagctgtggcattatgcgtgtgatgttggtgatatcatagtatcatgtttgtaactattatcattttatctgtatagtattttactaattttgttttgaacttaatgtagtctaacaaactcatgtttctttttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATAAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                      ||       | || || |        ||  ||  | |||      || |  ||||       ||     |     ||  |    | ||| ||||| |||||||||||||| ||||||||||| | |||||||||| |||| |||||||||||||| |||||||| ||||| || ||| ||||||
--------------------gtaaaacagctgaagcat-taggatccatctatctgtcatacctattctctgactgtagcagctcaccatttgtttctggat----tctttgcagGACTGGATCATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGAAGCTCGTTGGTTGTTATGGCTAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: AT3G03930.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
           || |  |  ||| ||       | ||| |      || |  |  ||     | |||||  ||   || |      |    |   || || ||     ||  ||||| ||||| ||| |||| ||||| ||||| | |||||||||| |||| |||||||||||||| || ||||| |||||||| ||||| ||||
-----------gtattaccatcatgtcc-----actatgtatgctctgactatatatatagtagcagctcaccacttttttt----tttttttttatggattc-----ttggcagGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGCTCATTGGTCGTTATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                  |||      |||||  |   |    ||| | | | |||  | ||||     ||   |||||  |  |   | | ||  ||||| ||||| |||||||| ||||||||||| | |||||||||| |||| |||||| || ||||||| | ||| || || || ||||| ||||
----------------------------------gtaataatcgcttgaagcata----tagga-atcaatcaattttat-----attaactcaccatttgcattttcttggcagGACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGATAACGGGAACTCATTAGTTGTTATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtc-gttcaatgatagaacagctat-ccctgttatg-cgccatgccctcacattgagtcatattttta--cagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                   | | ||  | || || |||   |  |   | | || |   |||| | |  |   |  ||| | | ||| |  | |||| |  ||||| ||||| ||||| |||||||| ||||| | ||| || ||| | || ||||||||||  || ||||||||||| || |||||||| ||||
---------------------------------gttgtctgatgtttctctgttagttatttttatatctgtgttctgtcaagatgatcttacctgagagtgaattctgttttgaatcagGAATGGATTATGGAGCAGTGGGAGAAGAACTACTACATTAGTTCTATTGCTGGTGCAAGCAATGGAAGCTCCTTAGTTGTCATGTCAAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv11s0016g04060.t01 (Vitis vinifera), 3'ss of exon 12
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
|||||||  |       | ||  |   |  || |  |  |   ||   | | |  || | | || | | |        | ||   || || ||  |||   |||| ||    ||||||||||| |||||||||||||| ||||| |||||||||| | || | ||||||||||  || || |   | ||||| || ||||| || |
gtgggtgc-taacaaagctctttaccatgaggcatgacctcttgcagtttgatttatcaaaaaatatccagggtaaaaaagc-ttattccttctgatt---tcatttt----cagGAGTGGATAATGGAACAGTGGGATAAGAACTTCTATATCACTTCCGTTGCTGGTGCAAGCAATGGCAATGCTTTGGTGGTAATGTCAAAGG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 13
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttac-agGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
        ||  | | |   ||| || |||  |  |||    | ||| |   | | ||   |  ||   || |||| ||    |    |  |||| ||  |    ||||| || |||| ||||| |||||||||||||||||||||| ||| |||||  | || || || ||   ||| || || || ||||| |||||||||||||
--------gttatttttt-ttcatgtgttgatttctat---tatcttctg--tgagtgg--gttcatgcatacctgatac-tactgacctttcacttttgg----attttcactagGATTGGATTATGGAACAGTGGGAAAAGAATTACTACATCAGCTCAATAGCAGGGGCTGCTAATGGGAGTTCTTTGGTTGTCATGTCTAAAG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 12
--------------------------------------gtgggtgtgtg-gtgtctcgctcaagt---tttgggtagtatatgcagcttgtcgttcaatgatagaacagcta--tccctgttatgcgccatgccctcaca-----ttgagtcatattttt-----------acagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                       |   | | |   ||| ||   ||| |   |||    |||||   |      |  | ||| | ||   |    |  |  ||||||| |         | |||     |  | | || |||||           | |||| ||||| |||||||||||||| || || |||||||||||||| || || || || | ||| || |||||  | || || |||||||| |
gtgcgtctcatttcttttgtttaacccatggcatacatatttatctttacatgtgtcatgcaattaaatttcatcagtatgatcgaggcatattacaaggctacttctttcagcttactgttatacatttaattttaacaagtgatcaattaatctttttttgttctgtctatagGAATGGATAATGGAACAGTGGGAGAAAAACTTCTATATCAGTGCAATAGCAGGAGCTACTAATGGGAGCTCACTAGTTGTAATGTCTAAGG

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: EFJ19085 (Selaginella moellendorffii), 3'ss of exon 9
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG---------
                                              |     |   |||   ||||  | | |  |   |    |||  |    |     |||| |        ||| ||||||||||| |||||||| ||||| | ||| ||||| || ||||| ||||| || ||||| |||||  |||| || ||||| || |         
---------------------------------------------gtactacttt-tgacgaaacaatttttcgaggcttctcacatttctctgctgcctgtcaaa--------gGAATGGATCATGGAGCAGTGGGAGAAGAACTACTACATCAGCGCAATCGCCGGTGCCAACAACGGTAGCTCGCTGGTGGTGATGTCCAAGGGAACGTCCT

upper sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 10
gtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatgatagaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                                                         | ||| ||| || | | |    |  |  ||  | ||| |     |  |   |   |||||||||||||||||||| ||||| || || ||||| || |||||||| || || || || ||||| |||||  |||| |||||||| ||||
---------------------------------------------------------gttagcacatct-tgcttaactttagtaat--cttcatagctcattct-cctcggcagGAGTGGATCATGGAACAATGGGAGAAAAACTTCTACATTAGTGCCATTGCAGGAGCCAACAACGGCAGCTCGCTGGTTGTCATGTCAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162165498|gb|FC340609.1|FC340609
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|162228109|gb|FC405691.1|FC405691
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|162191374|gb|FC367130.1|FC367130
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|162185156|gb|FC362290.1|FC362290
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|162176694|gb|FC352539.1|FC352539
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|100448451|gb|CJ972750.1|CJ972750
EST:     CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
genomic: CAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCT
EST: gi|37831666|gb|BJ589678.1|BJ589678
EST:     TCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGG                         GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGC
genomic: TCAAGTTTATGAGCTGTCACATGTATTCCTCCACAA-Ggtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 25 (upstream exon), 23 (downstream exon)
Score: 4

CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgt ... atttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacagctatccctgttatgcgccatgccctcacattgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG
                            ccctcac  putative branch site (score: 4)
                                            tattttt  putative PPT
                                         tcatattttta  TA-rich tract