1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAATGCAATTCTAGTTGTCAGTGTAAAGATTCTTGCCGCAATCGCGTGCTACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgcttcactttctttcactcgtcactaataaccatctttgattttacaaatcggaaaatatactgaagcaatatacagaaggttaaagttttgcgttatcttcacgggtttgcctggtgcag
species | Physcomitrella patens |
transcript | PP1S100_44V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAG GGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGTEST: gi|162186736|gb|FC362772.1|FC362772
genomic: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgct ... cctggtgcagGGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
EST: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAG GGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGTEST: gi|162186737|gb|FC362773.1|FC362773
genomic: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgct ... cctggtgcagGGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
EST: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAG GGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGTEST: gi|162271686|gb|FC448611.1|FC448611
genomic: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgct ... cctggtgcagGGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
EST: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAG GGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGTEST: gi|162240586|gb|FC419363.1|FC419363
genomic: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgct ... cctggtgcagGGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
EST: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAG GGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
genomic: TACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgct ... cctggtgcagGGATGGGGTGTGCGAGCAGCGGAGCCCATATCAAGGGGTACATTTGTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATGCAATTCTAGTTGTCAGTGTAAAGATTCTTGCCGCAATCGCGTGCTACAGAAGGGTGTTCGTTTGAAACTTGAAGTTTTCAAAAGCCGACACAAGgtaatgcgcttcactttctttcactcgtcactaataaccatctttgattttacaaatcggaaaatatactgaagcaatatacagaaggttaaagttttgcgttatcttcacgggtttgcctggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG