1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttcacagtgaaaacaatcaaacttcagcacattgtgctcgttttgcagctttcatgttagttgggtataagcaaatgagcggagtatctttatgtttgttgggacgtggtcgtagtttggatccaaaacagtggttttttcttgtttgcttgtctgaacaacttcgtccatgttgaccacagGCAGTCGAACACGAGTCGAATCGTGAACGAAAAAAACTTGAAAATTGGGACAATTGATGATTTGCAAAAGGTAAGGCGCACGGTTCTAGACCCTTCTGGA
species | Physcomitrella patens |
transcript | PP1S100_38V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACAGGTTGAGAAAGAGGTCCCTTAAAAACAAAAAGGCAAGAGTTCCAG GCAGTCGAACACGAGTCGAATCGTGAACGNNNNNNNCTTGAAAATTGGGAC
genomic: CGACAGGTTGAGAAAGAGGTCCCTAAAAAACAAAAAGGCAAGAGTTCCAGgtatgttcac ... ttgaccacagGCAGTCGAACACGAGTCGAATCGTGAACGAAAAAAACTTGAAAATTGGGAC
acagtggttttttcttgtttgcttgtctgaacaacttcgtccatgttgaccacagGCAGTCGAACACGAGTCGAATCGTGAACGAAAAAAACTTGAAAATTGGGACAATTGATGATTTGCAAAAGGTAAGGCGCACGGTTCTAGACCCTTCTGGA
tgttgac putative branch site (score: 1)
ttttttctt TA-rich tract